MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-394J10
Chromosome	9 (Build37)
Map Location	75,009,130 - 75,009,375
singlet/doublet	singlet
Overlap gene	Myo5a
Upstream gene	Nr1h2-ps, LOC100040764, Onecut1, BC031353, Arpp19, LOC100040812, LOC677501
Downstream gene	Myo5c, Gnb5, Bcl2l10, LOC384954, Mapk6, Leo1, EG666190, LOC100042070, Tmod3, Tmod2, Lysmd2, Scg3, LOC100042107, Bmp5, EG620071, Hmgcll1
Link	Open Mouse BAC browser

Click to get alignment info.

name	Nr1h2-ps (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:50800 MGI:1354955
definition	note : nuclear receptor subfamily 1, group H, member 2, pseudogene pseudo : _no_value

name	LOC100040764 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040764
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein

name	Onecut1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15379 MGI:1196423
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	BC031353 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:235493 MGI:2387648
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Arpp19 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:59046 MGI:1891691
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040812 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040812
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 1 Protein

name	Myo5a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17918 MGI:105976
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC677501 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:677501
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 27 ESTs, 2 Proteins pseudo : _no_value

name	Myo5c (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:208943 MGI:2442485
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gnb5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14697 MGI:101848
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Bcl2l10 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12049 MGI:1330841
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC384954 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:384954
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 49 Proteins pseudo : _no_value

name	Mapk6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:50772 MGI:1354946
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Leo1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:235497 MGI:2685031
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG666190 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:666190 MGI:3647337
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 1 Protein

name	LOC100042070 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042070
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Tmod3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:50875 MGI:1355315
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tmod2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:50876 MGI:1355335
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Lysmd2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70082 MGI:1917332
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Scg3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20255 MGI:103032
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042107 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042107
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 mRNAs, 282 ESTs, 17 Proteins pseudo : _no_value

name	Bmp5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12160 MGI:88181
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG620071 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:620071 MGI:3647285
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins

name	Hmgcll1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:208982 MGI:2446108
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040764 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149260026 GeneID:100040764
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein product : hypothetical protein LOC100040764 transcript_id : XM_001475203.1

name	Onecut1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130856 GeneID:15379 MGI:1196423
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : one cut domain, family member 1 transcript_id : NM_008262.3

name	BC031353 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:23956381 GeneID:235493 MGI:2387648
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence BC031353 transcript_id : NM_153584.1

name	Arpp19 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130434 GeneID:59046 MGI:1891691
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cAMP-regulated phosphoprotein 19 transcript_id : NM_021548.4

name	LOC100040812 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149260028 GeneID:100040812
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 1 Protein product : similar to Apoptosis inhibitor 5 transcript_id : XM_001475313.1

name	Myo5a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:115511051 GeneID:17918 MGI:105976
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : myosin Va transcript_id : NM_010864.2

name	Myo5c (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124486758 GeneID:208943 MGI:2442485
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : myosin VC transcript_id : NM_001081322.1

name	Gnb5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6754017 GeneID:14697 MGI:101848
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : guanine nucleotide binding protein, beta 5 transcript_id : NM_010313.1

name	Gnb5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142353269 GeneID:14697 MGI:101848
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : guanine nucleotide binding protein, beta 5 transcript_id : NM_138719.2

name	Bcl2l10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:7304926 GeneID:12049 MGI:1330841
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Bcl2-like 10 transcript_id : NM_013479.1

name	Mapk6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:76573878 GeneID:50772 MGI:1354946
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mitogen-activated protein kinase 6 transcript_id : NM_015806.4

name	Mapk6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:76573875 GeneID:50772 MGI:1354946
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mitogen-activated protein kinase 6 transcript_id : NM_027418.1

name	Leo1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:87299618 GeneID:235497 MGI:2685031
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) transcript_id : NM_001039522.1

name	EG666190 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149260031 GeneID:666190 MGI:3647337
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 1 Protein product : predicted gene, EG666190 transcript_id : XM_001475415.1

name	LOC100042070 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149260077 GeneID:100042070
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100042070 transcript_id : XM_001478508.1

name	Tmod3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84697033 GeneID:50875 MGI:1355315
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tropomodulin 3 transcript_id : NM_016963.2

name	Tmod2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84697032 GeneID:50876 MGI:1355335
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tropomodulin 2 transcript_id : NM_016711.3

name	Tmod2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84697030 GeneID:50876 MGI:1355335
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tropomodulin 2 transcript_id : NM_001038710.1

name	Lysmd2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:130490960 GeneID:70082 MGI:1917332
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : LysM, putative peptidoglycan-binding, domain containing 2 transcript_id : NM_027309.2

name	Scg3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142375169 GeneID:20255 MGI:103032
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : secretogranin III transcript_id : NM_009130.2

name	Bmp5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142374687 GeneID:12160 MGI:88181
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : bone morphogenetic protein 5 transcript_id : NM_007555.3

name	EG620071 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:82931764 GeneID:620071 MGI:3647285
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins product : predicted gene, EG620071 transcript_id : XM_884461.1

name	Hmgcll1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130046 GeneID:208982 MGI:2446108
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : 3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1 transcript_id : NM_173731.2

name	LOC100040764 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149260027 GeneID:100040764
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001475253.1

name	Onecut1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680241 CCDS:CCDS23339.1 GeneID:15379 MGI:1196423
definition	GO_component : GO:0005634 - nucleus [Evidence IDA]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IDA] [Evidence IEA] GO_process : GO:0030154 - cell differentiation [Evidence IMP]; GO:0007492 - endoderm development [Evidence IMP]; GO:0006006 - glucose metabolism [Evidence IMP]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : hepatic nuclear factor 6; HNF-3/forkhead homolog 12 product : one cut domain, family member 1 protein_id : NP_032288.1

name	BC031353 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23956382 GeneID:235493 MGI:2387648
definition	codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC235493 protein_id : NP_705812.1

name	Arpp19 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:10946986 CCDS:CCDS23340.1 GeneID:59046 MGI:1891691
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : cAMP-regulated phosphoprotein ARPP-19; cyclic AMP phosphoprotein, 19 kDa product : cyclic AMP phosphoprotein, 19kD protein_id : NP_067523.1

name	LOC100040812 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149260029 GeneID:100040812
definition	codon_start : 1 product : similar to Apoptosis inhibitor 5 protein_id : XP_001475363.1

name	Myo5a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:115511052 GeneID:17918 MGI:105976
definition	GO_component : GO:0016459 - myosin [Evidence IDA]; GO:0001750 - photoreceptor outer segment [Evidence IDA] GO_function : GO:0003779 - actin binding [Evidence IPI] [Evidence IDA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0005516 - calmodulin binding [Evidence IDA]; GO:0000146 - microfilament motor activity [Evidence IDA]; GO:0003774 - motor activity [Evidence IDA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0042640 - anagen [Evidence IMP]; GO:0007010 - cytoskeleton organization and biogenesis [Evidence IEA]; GO:0042759 - long-chain fatty acid biosynthesis [Evidence IMP]; GO:0042552 - myelination [Evidence IMP]; GO:0043473 - pigmentation [Evidence IMP]; GO:0048066 - pigmentation during development [Evidence IMP]; GO:0050808 - synapse organization and biogenesis [Evidence IMP]; GO:0007268 - synaptic transmission [Evidence IMP]; GO:0030050 - vesicle transport along actin filament [Evidence TAS]; GO:0007601 - visual perception [Evidence IMP] codon_start : 1 note : dilute lethal-20J protein; flailer product : myosin Va protein_id : NP_034994.2

name	Myo5c (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124486759 GeneID:208943 MGI:2442485
definition	GO_component : GO:0016459 - myosin [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0003774 - motor activity [Evidence IEA] codon_start : 1 product : myosin VC protein_id : NP_001074791.1

name	Gnb5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754018 GeneID:14697 MGI:101848
definition	GO_function : GO:0005083 - small GTPase regulator activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; hug; flail; flailer product : guanine nucleotide-binding protein, beta-5 subunit isoform 1 protein_id : NP_034443.1

name	Gnb5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:41281679 GeneID:14697 MGI:101848
definition	GO_function : GO:0005083 - small GTPase regulator activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; hug; flail; flailer product : guanine nucleotide-binding protein, beta-5 subunit isoform 2 protein_id : NP_619733.1

name	Bcl2l10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7304927 CCDS:CCDS23341.1 GeneID:12049 MGI:1330841
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0005624 - membrane fraction [Evidence ISS]; GO:0005739 - mitochondrion [Evidence IEA] GO_process : GO:0006916 - anti-apoptosis [Evidence IDA] [Evidence ISS]; GO:0006915 - apoptosis [Evidence IDA]; GO:0008625 - induction of apoptosis via death domain receptors [Evidence ISS]; GO:0042981 - regulation of apoptosis [Evidence IEA] codon_start : 1 product : Bcl2-like 10 protein_id : NP_038507.1

name	Mapk6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:76573879 CCDS:CCDS23342.1 GeneID:50772 MGI:1354946
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0004707 - MAP kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA] codon_start : 1 note : protein kinase, mitogen activated kinase 4; mitogen activated protein kinase 4; Erk-3 related product : mitogen-activated protein kinase 6 protein_id : NP_056621.4

name	Mapk6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:76573876 CCDS:CCDS23342.1 GeneID:50772 MGI:1354946
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0004707 - MAP kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA] codon_start : 1 note : protein kinase, mitogen activated kinase 4; mitogen activated protein kinase 4; Erk-3 related product : mitogen-activated protein kinase 6 protein_id : NP_081694.1

name	Leo1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:87299619 CCDS:CCDS23343.1 GeneID:235497 MGI:2685031
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : Leo1, Paf1/RNA polymerase II complex component, homolog protein_id : NP_001034611.1

name	EG666190 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149260032 GeneID:666190 MGI:3647337
definition	codon_start : 1 product : similar to Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) protein_id : XP_001475465.1

name	LOC100042070 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149260078 GeneID:100042070
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001478558.1

name	Tmod3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:8394460 CCDS:CCDS23344.1 GeneID:50875 MGI:1355315
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA]; GO:0031941 - filamentous actin [Evidence ISS]; GO:0030027 - lamellipodium [Evidence ISS]; GO:0001726 - ruffle [Evidence ISS] GO_function : GO:0003779 - actin binding [Evidence IEA]; GO:0051011 - microtubule minus-end binding [Evidence ISS]; GO:0005523 - tropomyosin binding [Evidence IEA] GO_process : GO:0051271 - negative regulation of cell motility [Evidence ISS]; GO:0051694 - pointed-end actin filament capping [Evidence ISS] codon_start : 1 note : ubiquitous tropomodulin product : tropomodulin 3 protein_id : NP_058659.1

name	Tmod2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84697031 CCDS:CCDS23345.1 GeneID:50876 MGI:1355335
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA] GO_function : GO:0003779 - actin binding [Evidence IEA]; GO:0005523 - tropomyosin binding [Evidence ISS] [Evidence IEA] GO_process : GO:0007611 - learning and/or memory [Evidence IMP]; GO:0007270 - nerve-nerve synaptic transmission [Evidence IMP]; GO:0045745 - positive regulation of G-protein coupled receptor protein signaling pathway [Evidence IMP] codon_start : 1 note : neural tropomodulin product : tropomodulin 2 protein_id : NP_001033799.1

name	Tmod2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31543876 CCDS:CCDS23345.1 GeneID:50876 MGI:1355335
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA] GO_function : GO:0003779 - actin binding [Evidence IEA]; GO:0005523 - tropomyosin binding [Evidence ISS] [Evidence IEA] GO_process : GO:0007611 - learning and/or memory [Evidence IMP]; GO:0007270 - nerve-nerve synaptic transmission [Evidence IMP]; GO:0045745 - positive regulation of G-protein coupled receptor protein signaling pathway [Evidence IMP] codon_start : 1 note : neural tropomodulin product : tropomodulin 2 protein_id : NP_057920.2

name	Lysmd2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:130490961 GeneID:70082 MGI:1917332
definition	GO_process : GO:0016998 - cell wall catabolism [Evidence IEA] codon_start : 1 product : LysM, putative peptidoglycan-binding, domain containing 2 protein_id : NP_081585.2

name	Scg3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6677867 CCDS:CCDS23347.1 GeneID:20255 MGI:103032
definition	codon_start : 1 product : secretogranin III protein_id : NP_033156.1

name	Bmp5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:66792782 CCDS:CCDS23348.1 GeneID:12160 MGI:88181
definition	GO_function : GO:0005125 - cytokine activity [Evidence IEA]; GO:0008083 - growth factor activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0051216 - cartilage development [Evidence IEA]; GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0040007 - growth [Evidence IEA]; GO:0001503 - ossification [Evidence IEA]; GO:0007389 - pattern specification [Evidence IMP]; GO:0001501 - skeletal development [Evidence IMP]; GO:0007179 - transforming growth factor beta receptor signaling pathway [Evidence IEA] codon_start : 1 note : short ear product : bone morphogenetic protein 5 protein_id : NP_031581.2

name	EG620071 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82931765 GeneID:620071 MGI:3647285
definition	codon_start : 1 product : similar to Chain C, Structure Of A Hif-1a-Pvhl-Elonginb-Elonginc Complex protein_id : XP_889554.1

name	Hmgcll1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33239379 CCDS:CCDS23349.1 GeneID:208982 MGI:2446108
definition	GO_function : GO:0016829 - lyase activity [Evidence IEA] codon_start : 1 product : 3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1 protein_id : NP_776092.1

name	LOC677501 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149260076 GeneID:677501
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 27 ESTs, 2 Proteins product : similar to Ac2-210 pseudo : _no_value transcript_id : XR_033693.1

name	LOC384954 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149260030 GeneID:384954
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 49 Proteins product : similar to alpha-2-tubulin pseudo : _no_value transcript_id : XR_032200.1

name	LOC100042107 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149260079 GeneID:100042107
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 mRNAs, 282 ESTs, 17 Proteins product : similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) pseudo : _no_value transcript_id : XR_033791.1

clone name	MSMg01-408P06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-504E19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-519I06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-372P10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-188N17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-131G22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-298C11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-422A15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-524A11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-331L02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-234C12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-501P05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-279D05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-328E07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-457K14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-306F06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-294A18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-170B06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-163G18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-341G22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-353M18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-429K12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-524M09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-491F21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-073D18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-091G11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-453A15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-263E10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-548B03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-153A07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-267B13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-367O03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-480K19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-441D22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-452K15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-275G03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-327E07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-320I09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-441P21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-406C02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-109D20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-101G13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-541N11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-393M22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-518J22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-144O13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-333E10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-261F21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-360D17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-326K01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-375L24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-173B14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-396M17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-231J08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-394J10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-469B19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-509F24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-487F20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-450M16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-290L21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-511E14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-084I23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-396C05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-389K16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-133D15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-160N21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-263I20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-341B08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-277C04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-490G08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-477N24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-543B06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-488P01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-289B13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-344A18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-208C15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-477D08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-277A22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-111G11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-328K20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-496M04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-276M03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-533G23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-078L02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-300N20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-262E12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-528P21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-400K16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-134C09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-436C21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-047D12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-169B15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-271E17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-450O07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-297O17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-480L20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-266G21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-482I20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-392D16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-127M14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-375L19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-162H15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-178L22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-526K05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-382D18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-117D13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-361C17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-128C13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-206I05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-192E18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-202A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-282L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-296C18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097K19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-030D19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-270A22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138M02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-274L19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-263I04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-101B13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267C12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208F07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039L05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-263D17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210B04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-212K19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-054H14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169I16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-086O03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-104P24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227J19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-189D02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-311A01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-286H13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-250C15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070K21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-341I17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-239E16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-266C23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-098G18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-215C14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-296N02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191O18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-056O07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-276I13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-043A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110P16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-119J19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-221B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-066L09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-233L02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-193E13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-299F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074A22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-348A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-139M03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-120A22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-205H02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-286P10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-154G20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-269K14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155P19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-289B13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-116B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155P10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-159B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-294N03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-348J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-289E07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-090I07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158A06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-343C11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-131B20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-349D03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-341A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-016J16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216H14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-115M17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-220M14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-198C22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-310F01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-344N06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-074N10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-172L07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097F14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-106O22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226F10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-038M16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-271F03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-338D14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-276C16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-125L24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-301F10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-205D10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-207B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298O05
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-394J10.T7 (MSMg01no394_j10.b1)	MSMg01-394J10.TJ (MSMg01no394_j10.g1)
ACC	AG495610	AG495611
length	800	954
length of high quality (start - end)	248 (76 - 323)	---
definition	CHROMAT_FILE: MSMg01no394_j10.b1 PHD_FILE: MSMg01no394_j10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:40:01 2005	CHROMAT_FILE: MSMg01no394_j10.g1 PHD_FILE: MSMg01no394_j10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:40:01 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	TCCCCTTTCXXXXXXXXXXXXXXXXXXXXXXXXXCTACATCTAGAAATCC GCGGAATTCTTGTTTTTGCACCACTCCCCTGTGAAGATAACTTTAAATTT ATGTCATCTTCAATATGTTAAAGGAGAATTTTAAATTGTCTTTGATCTCT AACAAAACTAATTTTTTTTAACCCTTTTCATGCAGTTTCGAAACTCCCTT CACCTGCTTATGGAAACCCTTAATGCCACTACTCCTCACTATGTACGCTG TATTAATCTCTAATGATTTCAAGTTTCCATTCACGTAAGTCAAAGTGAAA TAAGGAGAAAGACTTTTGGGGAATATTTTTTTGTCTGTAGAGGGAATCTA TTTCCAAAAATTTCTAGTTTTTTGACAACAAGAAAACTAATTAGCAGTTG GCTTTCTAAGGATTTGACAACCCCACGCCAATGGCATGTCTTTGGCTCTG GTTTTCCGTTTTGACTCCATCTCCGCTGCAGATCTTTCCGGCCTTCTTTC ACTTTCTATATCATCTTACTACCACAGCTGCCTGGACTACACCTTTTTCT GTTCCCCCCTCATTTGAATCCTCCTTACCCGTCCAAATCCCCAACACGTT TTCCCATACATCCTCTCCCTCTTTATAACCCTTTTTCCTACTCTGTACCC TTTCCCCCCCGTTTAACCCCTTCCCTTTTTATCATATCTTCTTTTCTACC CCTTTCAAACTTTTTCCTTATTCCCCTCACTTTCTTTTTTTCCCTCTTCC CCTTCATTTCTCCTCCCATTTTTTTACACAATATCTTCCTTATTCTCTCN	TTGGGAGAGCTAGGGCTAGTAGCTATAGGTTGCCTCCTCTTCCCCTATAA CTAGAAACTACATTGACCATAACATTTGCTACGCTCTGTTTCCGCATTAC TTTTATCCTCTCTATCTGTCACGGACCTTTCTACATGCACATCACACGCG ATATTTAACGTGGCCATAGACGACACACGAATATGCGTGTCCCGTAGCCC GTAGATATATCAATATATCGCTTAATAGATCGATGCTGTCGGTGTTATCC GCAATAATAATGTAGGAGAAAAAGAGAGATCGAAATAACAGAATACTTTG GGAGAAGAGGTCCATGGTACATTGTTGGTTGGCGGCGTATCGGTATGTAT CCTCGATTTCAATACTCTCTTCTTTCCTCTCCCTCGTCCAGTCACTGTAT TTTTTTATTTTCACCAGGAGTTCTTGACGACCTTCAGAATAAGACATCTA TTACGCTCAGACTATCTCGTGCTGTATCAATATCGTATTACCGCACGACC CATACGAACTACTGTTTTTTTATCCGATATGAAATATGCATCTGAACAAT AATATATTTCGCCATTTACCTCGCACCCGCTTCCACATCTCACATATTAG GTACCTCATGTCGTGGTGCGTACAGGTTGCGAATTACGTTACACCTTATA CATTAACAACGGGTTTATACGGTAGCGCGCCACCCCTATCGACTAGATGG ATAACATCATAGGTACCTACGTGTTTTACGCTGAGTCAGCATTTCAATGT TGATCGTATGCTGGAGGTACGCAATTGATTATATACGAAATCCGAATATC GGAAGGGGAAGTGGGCGGAGAGAAAAAGAAAAAATAAGAGGAAAGTGAAC ACCCGGGCGATAATAGAAATAAAATAAGAAAAACGATACATACCCCGATA AAGATATAGCACGTCATAATTGAATACGTACTGCACTCCTCCAATAGTTC ACCA
quality values	Open. Hide. 8 8 8 8 8 8 8 8 8 8 8 11 12 10 14 14 13 12 10 16 11 11 12 10 13 9 9 9 18 18 21 21 9 10 11 10 6 6 6 6 6 8 8 8 8 8 8 8 10 12 16 25 28 33 33 33 33 33 33 36 34 18 18 11 8 8 6 6 6 8 11 17 11 12 12 19 21 30 30 31 47 46 48 44 36 33 33 33 34 34 39 43 39 43 43 44 43 43 43 42 39 39 30 37 28 30 30 34 34 34 34 30 28 32 37 39 37 37 37 32 32 28 18 18 12 10 10 15 17 23 28 47 39 42 37 37 47 47 47 47 48 57 36 37 37 37 40 40 47 48 48 57 48 48 48 42 42 42 47 48 48 48 42 47 48 57 57 57 57 47 47 47 47 57 57 59 50 47 54 54 57 48 39 37 35 35 35 59 59 59 43 57 57 47 57 47 48 48 59 57 48 48 59 59 59 59 59 57 59 59 59 50 48 47 57 50 54 54 57 57 57 54 57 57 52 52 52 52 59 54 57 57 57 57 57 57 57 68 68 57 59 59 50 50 39 39 39 36 41 33 33 32 40 32 27 10 10 10 10 12 22 21 42 44 46 48 54 38 38 23 23 23 44 44 54 57 47 43 43 36 44 23 23 23 28 28 28 23 20 20 20 32 31 35 35 37 35 39 39 43 32 34 28 28 28 25 30 30 39 37 46 43 43 57 57 47 37 32 30 18 10 8 10 8 8 12 11 24 20 15 13 17 16 18 28 28 30 28 14 14 14 23 15 20 20 34 34 48 48 46 46 43 43 39 32 32 30 30 32 42 42 57 43 34 31 20 20 20 20 20 20 20 20 19 24 21 15 15 15 15 11 18 12 19 18 20 11 11 11 23 23 27 12 13 19 28 36 43 43 39 33 32 28 28 28 32 28 32 20 20 20 32 32 37 39 23 23 6 6 6 6 8 8 8 8 8 8 8 15 17 13 19 13 21 21 28 24 28 30 34 24 22 12 9 9 9 9 14 15 21 18 18 20 23 23 18 19 17 12 16 16 13 12 11 15 18 19 10 9 9 19 14 11 9 10 10 10 9 10 9 13 11 11 12 12 9 9 9 8 11 11 14 15 10 8 8 8 8 8 8 8 8 8 14 10 10 9 9 9 10 12 10 14 17 21 18 13 6 6 6 6 8 8 11 11 10 8 8 8 8 10 13 10 10 11 11 12 12 9 9 9 10 10 10 10 10 16 15 10 6 6 6 7 8 11 13 13 11 11 10 10 10 9 9 9 9 11 11 12 21 14 13 13 10 9 9 9 9 11 8 8 8 8 8 8 8 8 6 6 8 12 13 9 9 9 9 9 9 9 12 11 11 11 13 9 9 9 9 8 8 8 11 8 8 8 10 10 9 8 8 8 9 9 10 10 10 10 11 10 17 12 20 17 18 20 15 15 10 10 10 10 10 10 8 8 8 10 8 8 8 10 11 9 9 9 10 16 12 10 8 8 8 8 8 8 8 9 12 13 10 10 12 8 8 8 8 8 10 8 8 8 8 8 8 8 6 6 8 8 8 8 11 14 9 8 8 8 8 6 8 8 6 6 6 6 9 11 8 8 8 10 10 10 13 9 11 11 11 8 8 8 8 16 16 18 16 13 9 9 9 13 8 8 10 9 9 12 25 19 22 13 14 14 15 12 8 8 8 8 6 7 6 6 6 8 11 8 8 8 8 8 10 10 7 7 10 10 11 11 12 12 12 12 11 11 17 11 10 8 13 8 8 6 8 6 6 9 9 13 13 6 6 6 8 10 13 10 10 3 0	Open. Hide. 8 8 8 8 10 10 8 10 8 8 8 8 9 8 7 7 7 8 9 11 11 9 9 9 8 8 8 10 10 8 8 8 8 10 10 12 11 11 9 9 9 9 10 18 11 8 10 8 8 6 6 8 6 8 8 8 8 9 8 9 9 9 10 8 8 8 8 8 8 10 10 10 10 10 10 13 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 11 11 9 9 12 13 14 9 10 15 8 8 8 8 8 8 10 8 8 8 8 8 8 10 8 11 10 9 9 8 8 8 6 6 6 10 12 10 10 10 9 8 8 8 8 8 8 8 8 8 8 6 6 6 6 8 8 8 6 6 8 8 8 8 8 10 12 11 11 10 10 8 8 10 8 8 9 12 8 8 8 10 10 8 8 8 8 8 8 8 8 8 10 10 8 8 8 11 10 8 8 8 8 8 9 12 9 8 8 8 8 8 8 8 9 8 8 10 10 10 8 8 8 6 6 8 8 6 6 8 8 10 10 9 9 9 9 8 8 8 8 8 8 6 6 8 8 8 8 8 7 7 6 6 6 6 6 8 8 10 11 12 10 10 9 9 9 8 8 8 8 8 8 8 8 8 8 8 10 17 11 10 8 10 10 11 11 7 7 8 7 7 12 6 9 10 8 10 8 10 8 8 10 6 6 8 8 8 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 6 6 8 8 8 6 6 8 8 8 7 6 6 8 8 12 8 8 6 6 8 8 8 8 8 8 10 9 8 8 8 8 6 6 9 16 8 9 9 9 9 12 23 13 13 8 8 8 8 6 7 8 8 8 11 13 24 24 22 19 13 12 11 11 11 11 11 10 8 8 8 8 8 7 6 6 6 6 6 6 6 8 8 10 10 10 13 15 19 10 8 8 8 8 8 9 9 9 8 8 8 6 8 6 6 8 8 10 8 8 8 8 8 8 8 8 8 11 8 8 8 8 8 8 8 8 9 8 8 8 8 8 8 11 10 21 14 10 8 8 8 8 8 6 6 6 6 8 10 19 14 10 8 7 6 8 8 8 8 8 8 8 8 8 8 8 8 9 9 8 8 6 6 8 8 11 10 10 10 10 8 8 8 8 8 9 11 11 8 8 6 9 10 10 9 13 10 8 6 6 6 6 8 12 11 15 10 10 8 8 10 8 8 8 8 8 8 8 8 10 12 13 11 9 9 9 9 8 8 8 8 8 8 15 13 13 13 11 10 10 10 10 9 11 10 8 8 8 8 8 8 8 12 12 12 11 10 10 10 8 8 8 8 9 10 8 8 8 8 6 6 6 7 10 10 11 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 8 11 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 9 9 9 9 9 9 10 10 11 15 10 10 6 6 6 6 8 8 11 7 10 6 6 6 6 9 9 10 9 11 11 11 11 11 11 12 12 12 11 9 8 8 8 10 9 9 10 10 10 10 12 11 12 12 8 8 8 8 8 8 8 8 8 10 8 8 8 6 6 6 6 6 6 8 6 6 8 8 8 8 9 9 9 9 11 8 8 6 6 6 9 7 7 8 8 8 8 8 8 8 8 10 9 10 10 10 10 10 6 8 6 6 8 6 9 10 8 8 8 8 8 8 9 6 8 6 6 8 8 6 6 6 6 6 6 6 8 8 8 8 8 8 8 8 6 8 6 6 6 6 8 8 13 10 9 9 8 8 8 8 8 8 8 10 8 6 6 6 6 8 8 10 10 9 9 6 6 6 6 8 8 8 8 8 8 11 8 9 10 12 15 12 10 9 9 12 15 23 14 9 9 8 10 8 9 10 8 9 9 9 9 9 10 10 8 10 10 8 8 8 8 8 8 9 9 9 9 12 11 10 10 10 10 10 9 11 11 8 8 8 6 6 7 7 12 15 17 11 10 10 10 8 8 8 8 8 8 6 6 6 8 8 8 8 8 8 9 8 8 8 8 8 8 8 8 8 8 8 8 6 6 7 6 8 6 6 8 8 8 9 11 10 8 8 8 8 8 8 8 8 6 6 8 8 8 8 8 8 9 10 10 10 10 10 10 10 8 6 6 6

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no394_j10.b1 MSMg01no394_j10.b1 CHROMAT_FILE:
MSMg01no394_j10.b1 PHD_FILE: MSMg01no394_j10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:40:01 2005
         (248 letters)



>mm_chr9_75008930_75009575
          Length = 646

 Score =  456 bits (236), Expect = e-133
 Identities = 245/248 (98%), Gaps = 2/248 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cccctgtgaagataactttaaatttatgtcatcttcaatatgttaaaggagaattttaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cccctgtgaagataactttaaatttatgtcatcttcaatatgttaaaggagaattttaaa 260

                                                                       
Query: 61  ttgtctttgatctctaacaaaactaattttttttaacccttttcatgcagtttcgaaact 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 ttgtctttgatctctaacaaaactaattttttt-aacccttttcatgcagtttcgaaact 319

                                                                       
Query: 121 cccttcacctgcttatggaaacccttaatgccactactcctcactatgtacgctgtatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cccttcacctgcttatggaaacccttaatgccactactcctcactatgtacgctgtatta 379

                                                                       
Query: 181 atctctaatgatttcaagtttccattcacgtaagtcaaagtgaaataaggagaaagactt 240
           | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agc-ctaatgatttcaagtttccattcacgtaagtcaaagtgaaataaggagaaagactt 438

                   
Query: 241 ttggggaa 248
           ||||||||
Sbjct: 439 ttggggaa 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 646
Length adjustment: 9
Effective length of query: 239
Effective length of database: 637
Effective search space:   152243
Effective search space used:   152243
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information