NCCTCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGAT
CCGCGGAATTCAAGTTTTGCCTCCTTGCAAGGTGCTATAGGAGCCCAGCT
CCCAAAGCCACCATCACTGCCACTGGAGCCAGAGCCAGAGCCCACTGTGG
AAGCAAGTCCAACAGAAGCATCAGAGCAAAAGAAAGAAAAATAGCAACAA
ACAGGAAAAACCGAGGATGACCCTGGAGTAGGGGGTCTCTTAAGTGAGAC
CATATAGAAGGTGGTCATATGACCAGGCAGATGGAGGCTAACACTTCGTC
CCTGGGTGGGCACTGCAGAATTAAAACATATCCCAGGGTGTGTTGTGATG
ATCAGAAGGAGCCTAAGGCCTATGCAGCTCTTGGCTGGCCCCGTCATCCA
GGAACAAGGGCGAAGGCATGCTACATAGACGTGAGGCCTCGCATGTATAC
TCCAAGAGTTAGCAAGGCAAACGATGAAAGCCCGTTACTCAGTGAAGGAC
TTTTATCCTGACAAAGGGAAGAGGATCTCTACCCAGTAGGCTGTGCAATT
GAAGCCTCTTTTTAACTGACTGTGGGAAAATAGAAGTCCCCCCTGTAAAC
TCAAACCTTGCTTTAATAACCCATTTTACGATGTCTTTCCTTATCTACCC
TCCCCCCTCCCCCCTTTTGTACCTCATTTGGGACCCCTATCGGCCTTGTC
CCCCCTTTTCTTTGGTCCCCAAATAATCCTCAATAAACTATTTTCTTCTC
CCCCTTCTTACCACGTCCCCTTTTTTCCCCCTCCCC

NNNNCCCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGGCTAGAGAGACAGCTGA
GTGGTTAAAAGCACTGACTGTTCTTGCAGAGGACTTGGATTCAGTTCCTG
GAACCCACATGGTGGCTCAAATCATCTGTAACTCCAATTCTTTGGTCCCT
GTGGGCACCAGGCACATATGTGGTACACATACATACATATATACAATCAC
TCATATGCCTAAATAAAAATAAGAAAATCTTACAATATATGAATTATTAT
GTAGCTTTGCTGCTGTTTCCCTTTAATTTGCATGTCTATAAGTTATTTTT
AAGTTTATTGCATATTGCCTGGCAGTTTCTAATAAAATCCTATCGGACAA
GGAGAAACAAGTGTGTTTTTATACAAAAGTTTCTGTAACAAGAACAAACA
AAGAGGAGACATCCAGTTTTATTCTTAACAACCAAACATTAGAAAGGAAG
CAAATGTCTGTCAGCAAGTGAGTGGACCAACACACTGGTCCATCTTCACA
CTATGAGCTGTCAACTGGATGGGAAAATGGAATCACCGCTGATACCACCA
GCAGCGTGAGCTAATCTCCCCTTACACCAAGTTTAAAAAGCCAGGAAACG
CCAACTCCGGGTCCCCGTTTTGGGGAGACCAAAGGCAGTGCGCAATTAAT
GTCCACGAATCAATTATTAAGTTCTCCCCCCACCGGGGGGGAAAAAACCC
AACCAAATTGTTTGAACCGTN

Query= MSMg01no394_n05.b1 MSMg01no394_n05.b1 CHROMAT_FILE:
MSMg01no394_n05.b1 PHD_FILE: MSMg01no394_n05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:40:21 2005
         (403 letters)



>mm_chr9_59170191_59170993
          Length = 803

 Score =  741 bits (383), Expect = 0.0
 Identities = 398/403 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaggtgctataggagcccagctcccaaagccaccatcactgccactggagccagagcca 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 caaggtgctgtaggagcccagctcccaaagccaccatcactgccactggagccagagcca 544

                                                                       
Query: 61  gagcccactgtggaagcaagtccaacagaagcatcagagcaaaagaaagaaaaatagcaa 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 543 gagcccactgtggaagcaagtccaacagaagcatcagaacaaaagaaagaaaaatagcaa 484

                                                                       
Query: 121 caaacaggaaaaaccgaggatgaccctggagtagggggtctcttaagtgagaccatatag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 caaacaggaaaaaccgaggatgaccctggagtagggggtctcttaagtgagaccatatag 424

                                                                       
Query: 181 aaggtggtcatatgaccaggcagatggaggctaacacttcgtccctgggtgggcactgca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 aaggtggtcatatgaccaggcagatggaggctaacacttcgtccctgggtgggcactgca 364

                                                                       
Query: 241 gaattaaaacatatcccagggtgtgttgtgatgatcagaaggagcctaaggcctatgcag 300
           ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gaattaaaacagaacccagggtgtgttgtgatgatcagaaggagcctaaggcctatgcag 304

                                                                       
Query: 301 ctcttggctggccccgtcatccaggaacaagggcgaaggcatgctacatagacgtgaggc 360
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ctcttggctggccccatcatccaggaacaagggcgaaggcatgctacatagacgtgaggc 244

                                                      
Query: 361 ctcgcatgtatactccaagagttagcaaggcaaacgatgaaag 403
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ctcgcatgtatactccaagagttagcaaggcaaacgatgaaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 803
Length adjustment: 9
Effective length of query: 394
Effective length of database: 794
Effective search space:   312836
Effective search space used:   312836
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no394_n05.g1 MSMg01no394_n05.g1 CHROMAT_FILE:
MSMg01no394_n05.g1 PHD_FILE: MSMg01no394_n05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:40:21 2005
         (420 letters)



>mm_chr9_59033532_59034351
          Length = 820

 Score =  632 bits (327), Expect = 0.0
 Identities = 333/335 (99%)
 Strand = Plus / Plus

                                                                       
Query: 86  ctcaaatcatctgtaactccaattctttggtccctgtgggcaccaggcacatatgtggta 145
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 ctcaaatcatctgtaactccaattctttggtccctgtgggcaccaggcacatatgtggta 345

                                                                       
Query: 146 cacatacatacatatatacaatcactcatatgcctaaataaaaataagaaaatcttacaa 205
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 cacatacatacatatatacaatcactcatatgcctaaataaaaataagaaaatcttacaa 405

                                                                       
Query: 206 tatatgaattattatgtagctttgctgctgtttccctttaatttgcatgtctataagtta 265
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 406 tatatgaattattatgtagctttgctgctgtttccctttaatttgcatgtctatacgtta 465

                                                                       
Query: 266 tttttaagtttattgcatattgcctggcagtttctaataaaatcctatcggacaaggaga 325
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 tttttaagtttattgcatattgcctggcagtttctaataaaatcctatcggacaaggaga 525

                                                                       
Query: 326 aacaagtgtgtttttatacaaaagtttctgtaacaagaacaaacaaagaggagacatcca 385
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 526 aacaagtgtgtttttatacaaaggtttctgtaacaagaacaaacaaagaggagacatcca 585

                                              
Query: 386 gttttattcttaacaaccaaacattagaaaggaag 420
           |||||||||||||||||||||||||||||||||||
Sbjct: 586 gttttattcttaacaaccaaacattagaaaggaag 620


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space:   333321
Effective search space used:   333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)