BAC Information

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BAC

Clone NameMSMg01-394N08
Chromosome9 (Build37)
Map Location 107,458,548 - 107,616,167
singlet/doubletdoublet
Overlap geneRassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1, Sema3f
Upstream geneIqcf3, Iqcf4, LOC100041096, Grm2, Tex264, Rad54l2, LOC100041128, Vprbp, Armet, Dock3, Mapkapk3, Cish, Hemk1, 6430571L13Rik, Cacna2d2, Tmem115, Cyb561d2, Tusc4, Zmynd10
Downstream geneRbm5, Rbm6, Mon1a, Mst1r, 4921517D21Rik, Camkv, Traip, Ube1l, D330022A01Rik, 6230427J02Rik, 1700021K14Rik, Ihpk1, Gmppb, Rnf123, Amigo3, Mst1, Apeh, Bsn, LOC100042108, Dag1, Nicn1, EG434437, Tcta, Rhoa, Gpx1, Usp4, LOC623859, 1700102P08Rik, Ccdc36, BC048562, Klhdc8b, LOC100042228, Ccdc71, Lamb2, Usp19, Qars, Qrich1, Impdh2, 4733401H18Rik, Dalrd3, Wdr6, 4933406E20Rik, Arih2, ENSMUSG00000074075, Slc25a20, Prkar2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-394N08.T7 (MSMg01no394_n08.b1)MSMg01-394N08.TJ (MSMg01no394_n08.g1)
ACCAG495796AG495797
length813780
length of high quality
(start - end)
252 (74 - 325)245 (84 - 328)
definitionCHROMAT_FILE: MSMg01no394_n08.b1 PHD_FILE: MSMg01no394_n08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:40:21 2005CHROMAT_FILE: MSMg01no394_n08.g1 PHD_FILE: MSMg01no394_n08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:40:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,615,916 - 107,616,167)(107,458,548 - 107,458,792)
sequence
CTCCCTTCCTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTACAGA
ACCGCGGAATTCAGCCTTTCCCTGAACTTGTGATCAAGGCTTGGGGCTCT
AGCACCCTGCCAAACCCTGAGCACCTGTCTGTTGCCTGCCTTTGGTTCCC
GGTGGGCATCACAGCCTGGTCTTCTGTCCTGGGGCTTTCTCTCAACTCCT
GAAGATGTCTGTTCTCTTCAGCGTGGTGGTCACATGTCCTGCCCACTTTA
CTCTGTCTACTTCTCCATTCCCTGCTGGCGACAATAGGGCCACTTCCTTT
GCAAGACTGAAGAACATCTACAGTATTTTTCTAGGATCCTTGTTAGAATA
GGAGTTCCCCCAACTTGCGGTTGCTTTTCATCTGTTTGTTTGTTTTAGCT
TTCCCGAGATAGAATCTCACCCCCCCCCCCCCGCCTGGCCTATATATTAG
TAACATATATCACCTTTGCTTTTCCCCTTCACTATACATCCTTTCCTCCT
TTTGCCGTTACATCTCATTTCTTTTTTGCTTCTTTCACGCCCTCTTCGTC
ACTCCTTCTTACCTTTAAATCACCATCCTTTTTCTTCCCCCCCTTTCCCC
TCACTTTTCCCCCTTCTCCCTTTTTCTATCCTTAATCACCCTTCTCTTTT
TCTCCCATTTTCCATTCACTCTACCCTTCACACCCCTTCTCCCCTTTCCC
TTTCTATCGCTTCATGTCTTTTCCCCCCTCTATTACTCTTCTTCTCTGCA
TAATTTACTTTTTCCCTACTCCCTCCTTAATCCTCCCTTTTTTTCTCTAC
TTTCTTATTTCTC
NNTTTTNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTGGGACCAGGCACT
GCCTAGCGGTGATCCCAGCTGTGTTTGTTCCAATTGCATTCCAATTTAGG
GCCTTTCTGAAACCAACAGGAAGTAAGACTCACACTGGGAGTTGAGGACT
GACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGGAACCACATGGTGG
CTCACAACCATCTGTAATAGGATCTGATGCCCTCTTCTGATGCATCAGAA
AACAGCTACAGTGTATTCACACATATATTTTTTAAGTAAATAAATCTTAA
AAAACAAAACCAAACCATGAAGTAAGACTCAGGCAGTTAGGTCAAGTGAG
TCCTGGTTGCCCTGAGCAGTACCCCCACTCCACCCTCCCGTAGTTCCCGA
ATAACCTTGTCTCTGGGCTAAGTCCTCTCACAGCGACGTCCGATGAACAG
TAGCCTCCCTGCTTGCTGCTTGTCAGACAGGCCTTGCTGGGACTTTGCCT
GTACCCCCCTGTCCTATGAAAACCCTGATTGCACTTGTCCTCTTATCGCC
ATCTTTTTTCGTTCTCATATTGGTATTTTTCTACCCTTCCCTTTCTCTAA
ATTCCTTGCCCTTTTAACTCTTTTTATTCTTACCCCCTGTCCCTCATATT
TTTATTTCAACTATTTCCTACTTACCCTTATACGTTTCCACCCTTTATCT
TTTCTTATTCACTTTCCCTTTTTTTCTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no394_n08.b1 MSMg01no394_n08.b1 CHROMAT_FILE:
MSMg01no394_n08.b1 PHD_FILE: MSMg01no394_n08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:40:21 2005
         (252 letters)



>mm_chr9_107615716_107616367
          Length = 652

 Score =  433 bits (224), Expect = e-126
 Identities = 245/252 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaacttgtgatcaaggcttggggctctagcaccctgccaaaccctgagcacctgtctgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 gaacttgtgatcaaggcttggggctctagcaccctgccaaaccctgagcacctgtctgtt 393

                                                                       
Query: 61  gcctgcctttggttcccggtgggcatcacagcctggtcttctgtcctggggctttctctc 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 acctgcctttggttcccggtgggcatcacagcctggtcttctgtcctggggctttctctc 333

                                                                       
Query: 121 aactcctgaagatgtctgttctcttcagcgtggtggtcacatgtcctgcccactttactc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 aactcctgaagatgtctgttctcttcagcgtggtggtcacatgtcctgcccactttactc 273

                                                                       
Query: 181 tgtctacttctccattccctgctggcgacaatagggccacttcctttgcaagactgaaga 240
           || | |||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||
Sbjct: 272 tgccgacttctccattccctggtggggacaatagggccacttcctttgcaagactaaaga 213

                       
Query: 241 acatctacagta 252
           ||||||| ||||
Sbjct: 212 acatctagagta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 652
Length adjustment: 9
Effective length of query: 243
Effective length of database: 643
Effective search space:   156249
Effective search space used:   156249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no394_n08.g1 MSMg01no394_n08.g1 CHROMAT_FILE:
MSMg01no394_n08.g1 PHD_FILE: MSMg01no394_n08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:40:21 2005
         (245 letters)



>mm_chr9_107458348_107458992
          Length = 645

 Score =  474 bits (245), Expect = e-138
 Identities = 245/245 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctgggaccaggcactgcctagcggtgatcccagctgtgtttgttccaattgcattcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctgggaccaggcactgcctagcggtgatcccagctgtgtttgttccaattgcattcca 260

                                                                       
Query: 61  atttagggcctttctgaaaccaacaggaagtaagactcacactgggagttgaggactgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttagggcctttctgaaaccaacaggaagtaagactcacactgggagttgaggactgac 320

                                                                       
Query: 121 tgctcttccagaggtcctgagttcaattcccaggaaccacatggtggctcacaaccatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgctcttccagaggtcctgagttcaattcccaggaaccacatggtggctcacaaccatct 380

                                                                       
Query: 181 gtaataggatctgatgccctcttctgatgcatcagaaaacagctacagtgtattcacaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtaataggatctgatgccctcttctgatgcatcagaaaacagctacagtgtattcacaca 440

                
Query: 241 tatat 245
           |||||
Sbjct: 441 tatat 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)