BAC Information

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BAC

Clone NameMSMg01-395K02
Chromosome9 (Build37)
Map Location 44,572,964 - 44,573,211
singlet/doubletsinglet
Overlap geneArcn1
Upstream genePvrl1, LOC100042548, Thy1, Usp2, Mfrp, Rnf26, LOC100042569, Mcam, Cbl, BC038167, Pdzd3, Nlrx1, Abcg4, Mizf, Tmem24, Dpagt1, H2afx, Hmbs, Vps11, LOC100043172, Hyou1, LOC100043178, Slc37a4, Trappc4, Rps25, Ccdc84, Foxr1, Upk2, Bcl9l, Blr1, Ddx6, LOC667406, LOC100042660, Treh, Phldb1
Downstream gene1500035H01Rik, Tmem25, BC021608, Mll1, Atp5l, Ube4a, Cd3g, Cd3d, Cd3e, Eva1, A530065I17Rik, Amica1, Scn2b, Scn4b, Tmprss4, Il10ra, Tmprss13, Fxyd6, Fxyd2, Dscaml1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395K02.T7 (MSMg01no395_k02.b1)MSMg01-395K02.TJ (MSMg01no395_k02.g1)
ACCAG496403AG496404
length788770
length of high quality
(start - end)
250 (73 - 322)166 (75 - 240)
definitionCHROMAT_FILE: MSMg01no395_k02.b1 PHD_FILE: MSMg01no395_k02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:32 2005CHROMAT_FILE: MSMg01no395_k02.g1 PHD_FILE: MSMg01no395_k02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NACTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAACAAATCCGC
GGAATTCACCATCTTTCTGTCACCGCTTCCTGACAGACTTGACCATGCTG
GCTGAAATGCATCTTCTGATTTGTCCTTTTTCTTTAGTTTTCTGCAAGCT
TAGTTTTCTTAACATTTGCCAAGCATTTTTTTAACTAACTTATTTTTGAA
TAAACTTGATTAGTCCTGTGATACCACCCATTTCTAAAATTTGCTTATCT
ACAAAACATTGTTCTTAATTAAGATAGTAAATAGACTTACTATGATGACA
GATATCTTTACCTACTGAGATTTTTTCTTATGCTTATAAAACTTATAAAG
TCTATAGACTTCTAAGATAGTGAGACTTACAGATTGTGAGTATGTGGTCG
GCGCCCGCTTTAGCCCCCCTATTCCCCCCCCCCCCCTTTTTCCTTTCCCT
ACCTTTTCCCCTAGCTTTTTCTTTCTTGTCCCTCATTTCTTTTAATTCTT
TCTTTTCATTCCCCCCTCCCTATCTTTTTCATTACCTTCTCATTCTCTTA
CACCTCCATTTCCTTTTTTTTTCTCTTTTTTTCCCCAACCTTTTTTCTTT
TTTTTCACTTCCACCTCTCTTTATCTTCCCACCTACTATCCTTCCCCCTT
TACCTTTCAACGATCTCTTATCCCCCTTTCTCCCCCCTTTTTTTTCCCCA
CAATCCCCTCTTCTTTTCACTCTTACTCCTTTACATCTTCACCTCCCTCT
TTTCTAATCTTAATTCCCCATTCTTTATCCTCTTTTTT
NTTCCAATGATANTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTATCCAAAAAATTCCTTTTAAAAAATTACTCAACT
GAAGCCAAATGTTTTACCTGGGAGGTAGAGTCAGATGTCTGTCTTGAATT
TGAGGACTGCATAGTAAGTTTCAGGCCAGTCAGGACTACAAAGTGAGACT
CTGTCTTAAAAATAAAAAACTACTCCTCTGTGTCTCTCGGNTGTANCAGT
GCTATATGCATTTAGTGTGTCACTATTANTGTTTTGNTATACAGCTATTT
TCCTGTTCTGTTTTGTTTATTATATTANNTTCTGGCTTTCCCTAATGGAG
AAAACACTGATTAATAATATAGGGTTANNNNNTTTTCNNNNNNNNNNNNN
NNNNNNNNNNCNNNNNNNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNCCCCCTATGGNNNNNNNNNNNNNNNNNNNNNNNNGGNNNNNNN
NGGGGGGGGTGGNNCGGGNCNCNNNNTCTGNNNNNNNNNNNNNNNAAAGA
GGGGGGGGGGGTGNCNTTATGGNCCCNNNCCAATGCAGGGGGGGGAACCT
GCNCCNNNNNNNTNNNNTTNNTNCCTCCCCNNNTCTTTTTTTTCCTCTTT
TTTCCTTTCTTCTTTTTTCTTTTTTCCCTTTCTTTTTTTTTTTTCCTCTT
TTTTTTTTTCTTTTTCTTTTTCTTTTTCTCCCTTTTCTTTCTCTACCACT
TCCTATAGGTAGCGCGCGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_k02.b1 MSMg01no395_k02.b1 CHROMAT_FILE:
MSMg01no395_k02.b1 PHD_FILE: MSMg01no395_k02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:32 2005
         (250 letters)



>mm_chr9_44572764_44573413
          Length = 650

 Score =  480 bits (248), Expect = e-140
 Identities = 248/248 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccgcttcctgacagacttgaccatgctggctgaaatgcatcttctgatttgtcctttttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ccgcttcctgacagacttgaccatgctggctgaaatgcatcttctgatttgtcctttttc 389

                                                                       
Query: 61  tttagttttctgcaagcttagttttcttaacatttgccaagcatttttttaactaactta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tttagttttctgcaagcttagttttcttaacatttgccaagcatttttttaactaactta 329

                                                                       
Query: 121 tttttgaataaacttgattagtcctgtgataccacccatttctaaaatttgcttatctac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tttttgaataaacttgattagtcctgtgataccacccatttctaaaatttgcttatctac 269

                                                                       
Query: 181 aaaacattgttcttaattaagatagtaaatagacttactatgatgacagatatctttacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 aaaacattgttcttaattaagatagtaaatagacttactatgatgacagatatctttacc 209

                   
Query: 241 tactgaga 248
           ||||||||
Sbjct: 208 tactgaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)