BAC Information

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BAC

Clone NameMSMg01-396I17
Chromosome9 (Build37)
Map Location 20,924,648 - 20,925,098
singlet/doubletsinglet
Overlap geneTyk2
Upstream geneOlfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873, Olfr18, Zfp560, 4921534A09Rik, EG624824, Zfp26, Zfp426, 5730601F06Rik, 7030419G21Rik, LOC100041205, 2210010B09Rik, 5730577I03Rik, Fbxl12, Ubl5, Pin1, Olfm2, Col5a3, Rdh8, A230050P20Rik, Angptl6, Ppan, Eif3s4, Dnmt1, Edg5, Mrpl4, Icam1, Icam4, Icam5, Glp1, B230118G17Rik, Raver1
Downstream geneCdc37, Pde4a, Keap1, Edg8, Atg4d, BC021438, Cdkn2d, Ap1m2, Slc44a2, Ilf3, Qtrt1, Dnm2, Tmed1, AB124611, Carm1, Yipf2, 1810026J23Rik, EG666043, Smarca4, Ldlr, Spc24, Ankrd25, Dock6, EG624219, Rab3d, BC010787, 2510048L02Rik, BC018242, 2310047B19Rik, Epor, Rgl3, C330001K17Rik, Prkcsh, Elavl3, Zfp653, Ecsit, EG625409, Cnn1, Elof1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396I17.T7 (MSMg01no396_i17.b1)MSMg01-396I17.TJ (MSMg01no396_i17.g1)
ACCAG497097AG497098
length752752
length of high quality
(start - end)
279 (34 - 312)450 (66 - 515)
definitionCHROMAT_FILE: MSMg01no396_i17.b1 PHD_FILE: MSMg01no396_i17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:42 2005CHROMAT_FILE: MSMg01no396_i17.g1 PHD_FILE: MSMg01no396_i17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGCGGCCGCTATACGACTCCTATTTTCCAAGATCCGCGGAATTCAGTCTT
CTTTCCCGTCTACATAAGCAGCTGTGTAGTGCTTGCCTGTGCTGTGTTTG
AAGCGCTGGGGAGGTGGAGACAGGTGGATCCCCTGGAATTTGCTGGCCAG
CGACTGTGGCCTAGCCAATGAGCTCCAGGAAGAGTGAGAGACCCTGTCTC
AAGAAAACAAACAAAAAGGTGGTGAATAATAGAGGAAGACGGGAATTGAC
CTCTGGCCTCCGCACACATGCACACACATGTACACATACCTCACAGGTAC
ACACACATACTTATTTTATATGTATACACAACACACACACAAAAGCATAC
GTATACGCAATACGCTCACACTCACCCACACATACTACTGCTAAATGTCT
CCCTGGGGAGCTGTAAGCAGTGTCTACTGCTCTTATGTGTGGTCCCACTG
ACAAATCAAGGTGCAGTTCCACCAGAGGTCACTCTGGGGAGCCCATGAGT
TCCTGCTCTACCGACAGGCCAGAGTGTTTTGGGCAGGAGGACTGCAGGTG
ATGTCATGTACTTTTATATTTTTGATTTCCGAGACAGGGTTTCTCTGTGT
AGCCCTGTGTAGGTTGACCTGGAACTCACCCTATAACCAGGTAGGCCTTC
TATTGAGGTCCCAGTGCCCCCTGCCCCCCCAGGGAGGGNCTTATGGTGGG
GGATTCCCCCGGGCTCGTTCTCCCTGTGTTTTTTTTATATAAATCCGCCT
CC
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCAGAGTATGCATCCTGCAGTGCCAACCCCTGGCAT
CCTTGGGCCACCATCACTCACATCAGGGGCCCATGGATGCCGTTCTGGAT
GCTAGTCACCAGCCTCGGGGGTGCCACCTCATGGCACAGATAGTGGCTGG
AGTCAGCAGTCAAGCGGAAATAGCCATCGACCAGGGCCACAAAGGACAGG
GCCTCAGCCTGGGAACAGAGGCACAGCAACTGTGGGGCCAGAGGGACATG
GTCAGGGGGCCAGTTTGACTCATCCCAGTCCTCCCCCACCAGCCTACTGC
CCAGGGCTCCCACCAAGCACTTGTTGTCTTGGAGGTGGATGTGCACGCGA
CGCTCCTTTAGCACCACGTGGGAAATGTCCTGGAAGTCACAGAAGTAGGT
CCAAGGTGGTTCTTGAGGGCTCTCTGTCGGGTGCTCTCCAGCCTCGGGGG
CTTTGGGCTTCTTCCCCGACCGGCTGCCGTGGGGATTCCCTCTGCTGATA
CCTCTCTCAGATTCCTAAACACCTAAGTGGGGTTGGGTTTGAAATACCGT
CTGTTAGGATATTTTCATTTCCCTTCCTAGAAACTTATAAAAATTTATTC
CTTTTTCTCTTGCCCTCTCCTCTAATCTATTTCTCATGGTAATTTCCACT
CGCTTATACCTTGTTTCTTATAAATTTTTAATACTTATGATCCTTTCTAA
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_i17.g1 MSMg01no396_i17.g1 CHROMAT_FILE:
MSMg01no396_i17.g1 PHD_FILE: MSMg01no396_i17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:42 2005
         (450 letters)



>mm_chr9_20924448_20925298
          Length = 851

 Score =  797 bits (412), Expect = 0.0
 Identities = 441/454 (97%), Gaps = 7/454 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagagtatgcatcctgcagtgccaacccctggcatccttgggccaccatcactcacatca 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagagtctgcatcctgcagtgccaacccctggcatccttgggccaccatcactcacatca 260

                                                                       
Query: 61  ggggcccatggatgccgttctggatgctagtcaccagcctcgggggtgccacctcatggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggggcccatggatgccgttctggatgctagtcaccagcctcgggggtgccacctcatggc 320

                                                                       
Query: 121 acagatagtggctggagtcagcagtcaagcggaaatagccatcgaccagggccacaaagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acagatagtggctggagtcagcagtcaagcggaaatagccatcgaccagggccacaaagg 380

                                                                       
Query: 181 acagggcctcagcctgggaacagaggcacagcaactgtggggccagagggacatggtcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acagggcctcagcctgggaacagaggcacagcaactgtggggccagagggacatggtcag 440

                                                                       
Query: 241 ggggc----cagtttgactcatcccagtcctcccccaccagcctactgcccagggctccc 296
           || ||    |||   |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 441 ggcgctcagcag---gactcatcccagtcctcctccaccagcctactgcccagggctccc 497

                                                                       
Query: 297 accaagcacttgttgtcttggaggtggatgtgcacgcgacgctcctttagcaccacgtgg 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 accaagcacttgttgtcttggaggtggatgtgcacgcgacgctcctttagcaccacgtgg 557

                                                                       
Query: 357 gaaatgtcctggaagtcacagaagtaggtccaaggtggttcttgagggctctctgtcggg 416
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 558 gaaatgtcctggaagtcacagaagtaggtccaaggtggttcctgagggctctctgtcagg 617

                                             
Query: 417 tgctctccagcctcgggggctttgggcttcttcc 450
           ||||||||||||| ||||||||||||||||||||
Sbjct: 618 tgctctccagccttgggggctttgggcttcttcc 651


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 851
Length adjustment: 10
Effective length of query: 440
Effective length of database: 841
Effective search space:   370040
Effective search space used:   370040
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)