Query= MSMg01no396_k08.b1 MSMg01no396_k08.b1 CHROMAT_FILE:
MSMg01no396_k08.b1 PHD_FILE: MSMg01no396_k08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:49 2005
(243 letters)
>mm_chr9_110452609_110453251
Length = 643
Score = 404 bits (209), Expect = e-117
Identities = 235/251 (93%), Gaps = 14/251 (5%)
Strand = Plus / Plus
Query: 1 agtccctgttcttctcggagcagtcagagctacaaacattattcacaccgctgggaagat 60
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 agtccctgttcttctcggagcagtcagagctacaaacattattctgaccgctgggaagat 260
Query: 61 ggattagagaccaggagacatgcatatgaggaagagtatgagagtaaaggctgttctcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggattagagaccaggagacatgcatatgaggaagagtatgagagtaaaggctgttctcaa 320
Query: 121 actgaaaaatacttccttcataaaggaacagagagaagtgcagaaagttgttatttttt- 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actgaaaaatacttccttcataaaggaacagagagaagtgcagaaagttgttatt----c 376
Query: 180 ---gtttggcaggaaagcagataatcacctgcctgacattgctca------gagtgacgg 230
|||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 377 acagtttggcaggaaagcagataatcacctgcctgacattgctcatgctcagagtgacgg 436
Query: 231 ggttgatagta 241
|||||||||||
Sbjct: 437 ggttgatagta 447
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space: 148356
Effective search space used: 148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no396_k08.g1 MSMg01no396_k08.g1 CHROMAT_FILE:
MSMg01no396_k08.g1 PHD_FILE: MSMg01no396_k08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:49 2005
(339 letters)
>mm_chr9_110623399_110624138
Length = 740
Score = 557 bits (288), Expect = e-163
Identities = 328/342 (95%), Gaps = 5/342 (1%)
Strand = Plus / Minus
Query: 1 cctctagccgagggggcaaggacagtgggagtttaggccataattttcacctggagtgca 60
|||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 540 cctctagccgagggtgcaaggacagtgggagtttaggccataagggtcagctggagtgca 481
Query: 61 ggcctgcaaggctaggcctgtacattcactgaatagccagaatgtttgctcaggatcccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ggcctgcaaggctaggcctgtacattcactgaatagccagaatgtttgctcaggatcccc 421
Query: 121 acccgactccccatcctctgggccgtgctgaaccatttatgggctctgaaaaggcctgta 180
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 420 acccgactccccatcctctgggccatgctgaaccatttatgggctctgaaaaggcctg-a 362
Query: 181 -tctcaggccgcatgcctctacgtgggctgcttggctcactgcgcagtccagctttgtag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cgctcaggccgcatgcctctacgtgggctgcttggctcactgcgcagtccagctttgtag 302
Query: 240 cgttt--tgngttctgtccctccctttctcagttcaaaccaccttgcttttcctccagcc 297
||||| || | |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 301 cgtttggtg-ggtctgtccctccctttctcagttcaaaccaccttgcttttcctccagtc 243
Query: 298 ctcctccaccccaggcctaagccgtctaactcaggcacgggg 339
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ctcctccaccccaggcctaagccgtctaactcaggcacgggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 740
Length adjustment: 9
Effective length of query: 330
Effective length of database: 731
Effective search space: 241230
Effective search space used: 241230
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
