BAC Information

Click to search

BAC

Clone NameMSMg01-396M17
Chromosome9 (Build37)
Map Location 74,961,203 - 74,961,696
singlet/doubletsinglet
Overlap geneMyo5a
Upstream geneWdr72, Nr1h2-ps, LOC100040764, Onecut1, BC031353, Arpp19, LOC100040812, LOC677501
Downstream geneMyo5c, Gnb5, Bcl2l10, LOC384954, Mapk6, Leo1, EG666190, LOC100042070, Tmod3, Tmod2, Lysmd2, Scg3, LOC100042107, Bmp5, EG620071, Hmgcll1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396M17.T7 (MSMg01no396_m17.b1)MSMg01-396M17.TJ (MSMg01no396_m17.g1)
ACCAG497285AG497286
length747742
length of high quality
(start - end)		99 (114 - 212)512 (65 - 576)
definitionCHROMAT_FILE: MSMg01no396_m17.b1 PHD_FILE: MSMg01no396_m17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:01 2005CHROMAT_FILE: MSMg01no396_m17.g1 PHD_FILE: MSMg01no396_m17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGAATTCATTGT
GTTGCCCAAGACGGTTAAGGCTAGGAACAAACTTACAACAATCCTCCTGT
CTCAACCCCAGAATGCTAGGATTACAAGTATTCTCTGAATGTGTTCTATT
TCTGCATGTAATTATATTTATTATTGTGAAGGGTGTGTGTGTGTGTGTGT
GTGTGTGTGTNCNCNTTNNNNNNNNNNNNNNNNNNNTTTTTTTTTTNNNN
NNNNNTNNNNNNNNNTNTNNTNTTTTTTTTTTNNNNTNNNNNNNNNNNNN
NNTTTTTNTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTT
TTTCCCCCCCTTCCTTCTTTTTTTTTTCCTTTTTTTTTTTTCTCTCCTCT
CCCCTTTTTTTTTTTTTTCTCCCCCTTTTTCTTTCCCTTTCCTTTTTTTT
TTTTTTTTCCCCTCTTTCCCTCCTTTTCTTTCCCCCCTCCCTTTTTTTTC
CCCCCCCCCTTTTCTTAATTTCTTTCTCTCTTCCCTCCCTTTTCCCCTTC
CCCTTTCCTTATTCTTTTTTTTTTTTTTTTTCCTTTCCCCCCCCTTTTTC
TTTTTTATCTTTTTTTTCTTTTCATTTTTCTCATATTATTTCTTTTTTTT
TTTTTTTTTTTATAATCTATCCAATTTATTCCATCTACCTTTCCTTCTCT
CCCTTTTCTTTTTCTTCCTCCTATCTTTTTTTTTTTTTTTCCCCCTC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAGGCCCTTATGCTCGCATGACCAGTACTCCACTAAC
TCAGCCATCTCCCTGACCCTGGGTTTCATTGTTAATAGTGACCAAGGTAT
AATCTACTTGAGCTCTGAGTTGAAATGACATCTGGATTTAGGTCTGTACC
ATGCAGATCTACTTCCAGAGAAGCTGTGATGTGATGACAGGCTAAGTACT
GGCCACTAGAAGTTCTGCAAACCTGTAACAACACTGCTTGCTACAAGAGA
GATGTTAAAGATTTAGCAATAAATTTAAAGGTGGGGGAAAGAGAATTAAA
AGGTAGTGGGTGGAGTGTTCCTCTTTCTCCACATCCTCACCAGCATCTGC
TGTCACCTGAATTTTTGATCTTAGCCATTCTGATTGGTGTAAGGTAGAAT
CTCAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGATGTTGAACA
TTTTTTCAGGTGCTTCTCAGCCATTCGGTATTCCTCAGTTGAGAATTCTT
TGTTTAACTCTGTGCCCCATTTTTTAATGGCATTATTTGATTTTCTTGAG
TCCAGCTTCTCCCATTCTTTGTATATATTGGAAATTAGTCCCCTATCCTA
TTTATGATTGGTAACAATCCTTTTCCACTTTTGTTGGTGTTCCTTTTGTC
TTAATTTGAACGATTTTTTGCCTAAAATAATTTTTCCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_m17.g1 MSMg01no396_m17.g1 CHROMAT_FILE:
MSMg01no396_m17.g1 PHD_FILE: MSMg01no396_m17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:01 2005
         (512 letters)



>mm_chr9_74961203_74962114
          Length = 912

 Score =  924 bits (478), Expect = 0.0
 Identities = 490/494 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggcccttatgctcgcatgaccagtactccactaactcagccatctccctgaccctgggt 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 494 aggcccttatgctcgcatgaccagtacttcactaactcagccatctccctgaccctgggt 435

                                                                       
Query: 61  ttcattgttaatagtgaccaaggtataatctacttgagctctgagttgaaatgacatctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ttcattgttaatagtgaccaaggtataatctacttgagctctgagttgaaatgacatctg 375

                                                                       
Query: 121 gatttaggtctgtaccatgcagatctacttccagagaagctgtgatgtgatgacaggcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gatttaggtctgtaccatgcagatctacttccagagaagctgtgatgtgatgacaggcta 315

                                                                       
Query: 181 agtactggccactagaagttctgcaaacctgtaacaacactgcttgctacaagagagatg 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 agtactggccacaagaagttctgcaaacctgtaacaacactgcttgctacaagagagatg 255

                                                                       
Query: 241 ttaaagatttagcaataaatttaaaggtgggggaaagagaattaaaaggtagtgggtgga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 ttaaagatttagcaataaatttaaaggtgggggaaagagaattaaaaggtagtgggtgga 195

                                                                       
Query: 301 gtgttcctctttctccacatcctcaccagcatctgctgtcacctgaatttttgatcttag 360
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 194 gtgttcctctttctccacatcctcaccagcatctgctgtcatctgaatttttgatcttag 135

                                                                       
Query: 361 ccattctgattggtgtaaggtagaatctcagggttgttttgatttgcatttccctgatga 420
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 134 ccattctgattggtgtaaggtagaatctcagggttgttttgatttgtatttccctgatga 75

                                                                       
Query: 421 ttaaggatgttgaacattttttcaggtgcttctcagccattcggtattcctcagttgaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74  ttaaggatgttgaacattttttcaggtgcttctcagccattcggtattcctcagttgaga 15

                         
Query: 481 attctttgtttaac 494
           ||||||||||||||
Sbjct: 14  attctttgtttaac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space:   452804
Effective search space used:   452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |