BAC Information

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BAC

Clone NameMSMg01-397C11
Chromosome9 (Build37)
Map Location 5,405,974 - 5,406,359
singlet/doubletsinglet
Overlap genenone
Upstream geneGria4, EG664889, Casp1, Casp4, Casp12
Downstream geneLOC547033, LOC100039361, LOC100039372, LOC664957, LOC676037, Pdgfd, Ddi1, EG664919
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397C11.T7 (MSMg01no397_c11.b1)MSMg01-397C11.TJ (MSMg01no397_c11.g1)
ACCAG497560AG497561
length774767
length of high quality
(start - end)
450 (68 - 517)387 (74 - 460)
definitionCHROMAT_FILE: MSMg01no397_c11.b1 PHD_FILE: MSMg01no397_c11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:29 2005CHROMAT_FILE: MSMg01no397_c11.g1 PHD_FILE: MSMg01no397_c11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCTAAATTTCCCGGATTTAAATTATTGCTTCTATTTCAATTTTCAGA
TCTTGAAGAGTTTTATTTATTTCCTTAACCTGTTTGATTGTATTTCCTGC
ATTTCTTTAATGGATTTATTCATTATTTCTTTAAAAATATGAATCATCTT
TATAAGATTGGATTTAGCATCATTTTCTTTTGCTTCAGCTGTGTTAGTAT
ATCCAGGGCTTGCTGTAATAGAACATCTGAGCTCCAGTGATGCCATATTG
TCCTGGAACTTTCTTATTTTGTTCTTATATTGGTCAATATCCTTCTAGTT
GTTCATGGTATTGACAGGCCTCTAGGAATGCAGGCCATGTTGCAGGCCTC
AAGACAGAGTTCAGGAAAAATATTGCCCAAGCTTTTGTCCCCGCCGGCAA
GAACACACTCAGGACAACCAGAATCTTCTGCGGAAAAGCTTTTATTGCCT
ACTTATCAGGAGGGAAGACCCCGAACCGGGAAAATGGTGCTGCTTATATA
ACCCGCACCAGTGAAATTTCAGCACCTGATGTGGGATGAAAGCTCCTGAT
TCTTTCTCCCCCCTCACCCCCTTACTAAACCGGGAGGAGGGGCGGGGACT
AGCCTGAATTCCCTCTTGCCTTTTGCGCAAAGGTTATTTTACATTTTAGG
GCCAGGGGAAACCCCCCCCCCCTTATAAGGCGAATTGCCTTCGGAACCCT
ATTTTTCCCCTGGCCCGTCTTTTC
TTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTCACAGCAGATCTCCCTAAAGCAGTT
ACCCTTCCAGATATCCCTTCACACACATGCACACAGGCCTTTCAGACCTT
GGCCATCTCATTATAGAGCCTATGTTCTCAGATGAGTCTAGGCTGTGTTG
ATAGTTAACAATGGCTAGAAAAGTCTTTCTAATTTGTTTTGTATTTAAAC
AAGTGATAGGTAGATACTCATCAGTATCATTTCTTCTCATGTGTTTCTCC
AAAAATTTATTCATAAGCTATATGGTAAACATTACATTTCATACCCAGCT
TACCATTTTATAATAGTGAAAATAGAATTGGGTTTATAAAGTAAAACTGA
AAATCTCGTGCAAAGTGCATATCTCTTCATAAAACAAGTACTGGGATTTA
GTTTTTAAGTGTGTATTTTAAATTCATACTTAAACAGGAATTATATTTTG
TTTGTTTGCTTCCACACTTGTATTGGAACAAAACTAAGCACTAAAGGTAA
CCTTTCCATTCATTCTCAGAGAACCTCTGTGGTATTGTTAGAAAACCCTC
CCACGTTTCCGGTTAATTCTTAGCGTGCGCACACCTTTCCCCTTTTATTT
TCCCCCCCCCTGTTTTTCTCTCCATTTTGTATTTCTTCCATCCAATTCCT
TTATTCTATATCTTTTCCCCTCCCCCCTCCTTCTTTTTTTCTCGCCTCCA
CTTTTTTTTTTTCTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_c11.g1 MSMg01no397_c11.g1 CHROMAT_FILE:
MSMg01no397_c11.g1 PHD_FILE: MSMg01no397_c11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:29 2005
         (387 letters)



>mm_chr9_5405774_5406559
          Length = 786

 Score =  725 bits (375), Expect = 0.0
 Identities = 384/387 (99%), Gaps = 1/387 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcacagcagatctccctaaagcagttacccttccagatatcccttcacacacatgcaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 ctcacagcagatctccctaaagcagttacccttccagatatcccttcacacacatgcaca 527

                                                                       
Query: 61  caggcctttcagaccttggccatctcattatagagcctatgttctcagatgagtctaggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 caggcctttcagaccttggccatctcattatagagcctatgttctcagatgagtctaggc 467

                                                                       
Query: 121 tgtgttgatagttaacaatggctagaaaagtctttctaatttgttttgtatttaaacaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 tgtgttgatagttaacaatggctagaaaagtctttctaatttgttttgtatttaaacaag 407

                                                                       
Query: 181 tgataggtagatactcatcagtatcatttcttctcatgtgtttctccaaaaatttattca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 tgataggtagatactcatcagtatcatttcttctcatgtgtttctccaaaaatttattca 347

                                                                       
Query: 241 taagctatatggtaaacattacatttcatacccagcttaccattttataatagtgaaaat 300
           ||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 taagcta-acggcaaacattacatttcatacccagcttaccattttataatagtgaaaat 288

                                                                       
Query: 301 agaattgggtttataaagtaaaactgaaaatctcgtgcaaagtgcatatctcttcataaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 agaattgggtttataaagtaaaactgaaaatctcgtgcaaagtgcatatctcttcataaa 228

                                      
Query: 361 acaagtactgggatttagtttttaagt 387
           |||||||||||||||||||||||||||
Sbjct: 227 acaagtactgggatttagtttttaagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 786
Length adjustment: 9
Effective length of query: 378
Effective length of database: 777
Effective search space:   293706
Effective search space used:   293706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)