Query= MSMg01no397_e01.b1 MSMg01no397_e01.b1 CHROMAT_FILE:
MSMg01no397_e01.b1 PHD_FILE: MSMg01no397_e01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:37 2005
(543 letters)
>mm_chr9_49879733_49880675
Length = 943
Score = 965 bits (499), Expect = 0.0
Identities = 530/543 (97%), Gaps = 6/543 (1%)
Strand = Plus / Plus
Query: 4 ggaattcctcatttcc---gaaagcttttagcaaagagcatggcctaggctatcattact 60
|||||||||||| | ||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 204 ggaattcctcat---cagggaaagcttttagcaaagagcatggcctgggctaacattact 260
Query: 61 aaaacctacctcacactgtattcttggatccaagagcaccaggtacccagtgtggaagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaacctacctcacactgtattcttggatccaagagcaccaggtacccagtgtggaagaa 320
Query: 121 cactgggtgtggaactgctttctataattagcagctacaatggtagactctcccaagtcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cactgggtgtggaactgctttctataattagcagctacaatggtagactctcccaagtcc 380
Query: 181 cagctccatcaactctagaattgggatgacaataatgacccatgatgccacaatgatagt 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 cagctccatcaactctagaattgggatgacaataatgacccatgatgccacaatgatatt 440
Query: 241 gacacatttaaacgctcaatacaatggctaagataggtgttcagtaaaaaccaactctgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gacacatttaaacgctcaatacaatggctaagataggtgttcagtaaaaaccaactctgg 500
Query: 301 ttgttattctagctatggctgtactactagtggttgtagtgggtcatctcagcagagact 360
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 ttgttattctagctatgactgtactactagtggttgtagtgagtcatctcagcagagact 560
Query: 361 gacacaaaacaaggcttagtaccctctccagtgcctatgcttttgacttgattgaatgca 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 561 gacacaaaacaaggcttagtaccctctccagtgcctatgcttttgacttgattggatgca 620
Query: 421 tattttattcatgatttcacccccaacttactcctcaggagaatataagacattatgata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tattttattcatgatttcacccccaacttactcctcaggagaatataagacattatgata 680
Query: 481 tgatgctcttaaattagaagtagaaatttggaagtgcgttgtagggggagtgagcaagca 540
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 681 tgatgctcttaaattagaagtagaaatttggaagtgtgttgtagggggagtgagcaagca 740
Query: 541 ttg 543
|||
Sbjct: 741 ttg 743
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space: 497289
Effective search space used: 497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no397_e01.g1 MSMg01no397_e01.g1 CHROMAT_FILE:
MSMg01no397_e01.g1 PHD_FILE: MSMg01no397_e01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:37 2005
(241 letters)
>mm_chr9_50067022_50067662
Length = 641
Score = 451 bits (233), Expect = e-131
Identities = 239/241 (99%)
Strand = Plus / Minus
Query: 1 tgacttataggaataaagacaataaacaaacaagaaactctgtgtctctgtgtcataaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgacttataggaataaagacaataaacaaacaagaaactctgtgtctctgtgtcataaga 382
Query: 61 gaatcattctgtgagagaaagcaaggttgaagagtccatgggaaggcagagggtgttatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaatcattctgtgagagaaagcaaggttgaagagtccatgggaaggcagagggtgttatc 322
Query: 121 tgagcaggtgtttaggctgagtcaagtcttgaagtgggggagttaactgtgaagtagtcc 180
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 321 tgagcaggtgtttaggctgagtgaagtcttgaagtgagggagttaactgtgaagtagtcc 262
Query: 181 tgtagaggtgtagtaaagaccataattaggaatatgcaatgacttaagagagagtcaaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtagaggtgtagtaaagaccataattaggaatatgcaatgacttaagagagagtcaaga 202
Query: 241 a 241
|
Sbjct: 201 a 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space: 146624
Effective search space used: 146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
