Query= MSMg01no397_o03.b1 MSMg01no397_o03.b1 CHROMAT_FILE:
MSMg01no397_o03.b1 PHD_FILE: MSMg01no397_o03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:27 2005
(530 letters)
>mm_chr9_106198439_106199368
Length = 930
Score = 874 bits (452), Expect = 0.0
Identities = 470/482 (97%), Gaps = 11/482 (2%)
Strand = Plus / Minus
Query: 54 aaaccacgcctagggaatccctgggcctgcactaactaccacagcagagggctgtgcatc 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 930 aaaccacgcctagggaatccctgggcctgcactaactaccacagcagagggctgtgcatc 871
Query: 114 acagacctcaagaagaggaacctgtagcatgtgacaaacaaccctgtcgctgtactggac 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 acagacctcaagaagaggaacctgtagcatgtgacaaacaaccctgtcgctgtactggac 811
Query: 174 agagaacttagaggaggagcaaggagaaatccttggactttatattctgactatcacctc 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 agagaacttagaggaggagcaaggagaaatccttggactttatattctgactatcacctc 751
Query: 234 catctgagctacatc-----ttttttacacaggcagggcctgctcactcttacccaaccc 288
||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 750 catctgagctacaccacagg------acacaggcagggcctgctcactcttacccaaccc 697
Query: 289 tgccagtactctaagactcagcctgcccttcttagtcccttagcgcctctgccttaagtg 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 tgccagtactctaagactcagcctgcccttcttagtcccttagcgcctctgccttaagtg 637
Query: 349 cagtccttcacagcccaggctgaaagcaccaaagagtaggaccatgaccttcacttcgtc 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 cagtccttcacagcccaggctgaaagcaccaaagagtaggaccatgaccttcacttcgtc 577
Query: 409 tccctcctgtgtgacccagtgagcagggaacagatgacaaacagatgcagaaagaacaat 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 tccctcctgtgtgacccagtgagcagggaacagatgacaaacagatgcagaaagaacaat 517
Query: 469 gtcaacaggtttgcctttgtgtgctgaataatgcatcagaatactgggaatgccatttgc 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gtcaacaggtttgcctttgtgtgctgaataatgcatcagaatactgggaatgccatttgc 457
Query: 529 ag 530
||
Sbjct: 456 ag 455
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space: 478400
Effective search space used: 478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no397_o03.g1 MSMg01no397_o03.g1 CHROMAT_FILE:
MSMg01no397_o03.g1 PHD_FILE: MSMg01no397_o03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:27 2005
(383 letters)
>mm_chr9_106049084_106049866
Length = 783
Score = 727 bits (376), Expect = 0.0
Identities = 381/383 (99%)
Strand = Plus / Plus
Query: 1 atatccccagcatccaagtcaagccaggtgtggctatgagcctatgacccctgaaactgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atatccccagcatccaagtcaagccaggtgtggctatgagcctatgacccctgaaactgg 260
Query: 61 gaaactgggaggcagagacaggcgaatcccagggagttactggtcaagtcaaaaacatga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaactgggaggcagagacaggcgaatcccagggagttactggtcaagtcaaaaacatga 320
Query: 121 ggttccgtgagaccggccactgaagaacacctgccacagtcagcccctgaccatatgcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggttccgtgagaccggccactgaagaacacctgccacagtcagcccctgaccatatgcat 380
Query: 181 gcacatgatgagagcatccctgcacacatgcacacatgcatataccacacacgaggacca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcacatgatgagagcatccctgcacacatgcacacatgcatataccacacacgaggacca 440
Query: 241 gggatgttgntcagtggtagcatgcttgtctagcatgtgcaagatgatgagtccagccct 300
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggatgtagttcagtggtagcatgcttgtctagcatgtgcaagatgatgagtccagccct 500
Query: 301 taatgttgtggttgttgctgttgttgctttttgctgtttttgaagtaataagaaagagaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taatgttgtggttgttgctgttgttgctttttgctgtttttgaagtaataagaaagagaa 560
Query: 361 aagaatcttctcttttgttggcg 383
|||||||||||||||||||||||
Sbjct: 561 aagaatcttctcttttgttggcg 583
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 783
Length adjustment: 9
Effective length of query: 374
Effective length of database: 774
Effective search space: 289476
Effective search space used: 289476
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
