Query= MSMg01no398_d14.b1 MSMg01no398_d14.b1 CHROMAT_FILE:
MSMg01no398_d14.b1 PHD_FILE: MSMg01no398_d14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:54 2005
(479 letters)
>mm_chr9_6297634_6298512
Length = 879
Score = 787 bits (407), Expect = 0.0
Identities = 452/473 (95%), Gaps = 12/473 (2%)
Strand = Plus / Plus
Query: 1 ccattttcatatatttttaaatgtccaagttatacttaatcaaattttattatatcagat 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccattttcatatgtttttaaatgtccaagttatacttaatcaaattttattatatcagat 260
Query: 61 tatggaggacgacaaatgggtgacattgaagtaatgtggtttgtgttgggaatgaatgtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatggaggacgacaaatgggtgacattgaagtaatgtggtttgtgttgggaatgaatgtt 320
Query: 121 ccacataagctttacttaatgtgcttaggattcagtcttctgcctttctccccagcacct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccacataagctttacttaatgtgcttaggattcagtcttctgcctttctccccagcacct 380
Query: 181 gtcatagttccctttcagagcagacaggcgaacagttattcaatgagtcctgctttgtat 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcatggttccctttcagagcagacaggcgaacagttattcaatgagtcctgctttgtat 440
Query: 241 tggaggcttttttttctgatgctgattgtgtgagactgaatgaggtttttgctttatgca 300
||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggaggcaactttcactgatgctgattgtgtgagactgaatgaggtttttgctttatgca 500
Query: 301 tataacagtggtgttataagattttagaaggatgctattgcttctctcactacctacata 360
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tataacactggtgttataagattttagaaggatgctattgcttctctcactacctacata 560
Query: 361 gtcagtgctcaatattctttagaaaatctttctttctttccttctttctttctttctttc 420
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 561 gtcagtgctcaatattctttagaaaatctttctttcttttcttctttctttctttctttc 620
Query: 421 tttctttctttcttcctttcttt--------ctttctttcttt--ttcttttg 463
|||||||||||||| ||||||| |||||||||||| ||||||||
Sbjct: 621 tttctttctttctt--tttcttttgatccttctttctttctttctttcttttg 671
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space: 407561
Effective search space used: 407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no398_d14.g1 MSMg01no398_d14.g1 CHROMAT_FILE:
MSMg01no398_d14.g1 PHD_FILE: MSMg01no398_d14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:54 2005
(446 letters)
>mm_chr9_6423038_6423878
Length = 841
Score = 785 bits (406), Expect = 0.0
Identities = 433/444 (97%), Gaps = 5/444 (1%)
Strand = Plus / Minus
Query: 3 tatgtatgaaagttgagttgacctgcaagccttggcacatggattcaaaaaacagaccca 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 tatgtatgaaagttgagttgacctgcaagccttggcacatggattcaaaaaacagaccca 582
Query: 63 tgacaacctcttttattcttttcttttttaaatatgtgaattctttggggattggattcg 122
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 581 tgacaacctcttttattct----ttttttaaatatgtgaattctttggggattggattcg 526
Query: 123 ggtcctcaagtctgaaaacatgcaagtttcagattaagccctaacccaaatctaaacccc 182
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 525 ggtcctcaagtctgaaaacatgcaagtttcagattaagccctaacccaaatc-aaacccc 467
Query: 183 attgctgcctagtttcatccatgtctgctctaatactcgtatctatctcaatctcactgt 242
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 attgctgcctagtttcatccatgtctgctctaatactcgtatctatctcaatctcactgc 407
Query: 243 ttgttttcttttaatttatagaatagaaccagtaaatccttgtggttgcttatttctctt 302
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 taggtttcttttaatttatagaatagaaccagtaaatccttgtggttgcttatttctctt 347
Query: 303 ttggagatgaaactcagggctttctcacacatgataggcacgctgacctccatgcctagc 362
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 346 ttggagatgaaactcagggctttctcacacatgataggcatgctgacctccatgcctagc 287
Query: 363 catacatcttcagtggtcaagtctgtagatgtcaataaagccctttcttatagcactctc 422
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 286 tatacatcttcagtggtcaagtttgtagatgtcaataaagccctttcttatagcactctc 227
Query: 423 atttaacctttcctcctatggcca 446
||||||||||||||||||||||||
Sbjct: 226 atttaacctttcctcctatggcca 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 841
Length adjustment: 10
Effective length of query: 436
Effective length of database: 831
Effective search space: 362316
Effective search space used: 362316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
