BAC Information

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BAC

Clone NameMSMg01-398F18
Chromosome9 (Build37)
Map Location 91,433,465 - 91,433,672
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039925, EG434428, LOC621576, Zic1, Zic4
Downstream geneLOC331000, Plscr1, Plscr2, 1700057G04Rik, LOC666850, Plscr4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-398F18.T7 (MSMg01no398_f18.b1)MSMg01-398F18.TJ (MSMg01no398_f18.g1)
ACCAG498479AG498480
length740756
length of high quality
(start - end)
533 (50 - 582)239 (78 - 316)
definitionCHROMAT_FILE: MSMg01no398_f18.b1 PHD_FILE: MSMg01no398_f18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:04 2005CHROMAT_FILE: MSMg01no398_f18.g1 PHD_FILE: MSMg01no398_f18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCGACTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTGCATACCACAGGAGATAGCATCCTAGAAAGTCCTTGAGC
TGACCATGGGCTTAAAATTCAAAAAGAAAGTTGCCTATTCAGTGACATTC
AGAATTGCCTCTGGCATTACACTAACACTTTAATAAAATCTAGGTCACTG
CCTTACACAGGAATTTACCATCACCTAGGAAAAAGGAAGTTTAAGACCTA
AAGAAGAACGAGAGTAGATACTTAGAACTGTAGATAGCTGAGTTACACCA
ATATACAAGTATTTACAATGGCCTAGGGGAAAGGTGAACTACCAAAACTG
GTTTTCAACCTCCCCCTGGCTTTCGACCTTGTTGCCCTCCCTTTTGGGAC
CCCTATTGGAATTCCTATTATTGATCTCCTTCGGTCCTTGGGCATTTCAG
AAATTGAACCGATTCGTTAAATCTCAAATTGATTCATCTCTTTCAAGTGC
ATTTGTTTCAGTTCATTACCAATGGCTGGACGTTGGTGATAACAAGCAGG
TTACTGGAGAAGAGACAGACGTGGATACTGCTTCATCGCCCTCTTCTCGG
GGAGAGAGACTCAATTTCCATATAACGCTTAAGTAAGATCATTCCCCTCC
CCCTAAATTCGGCCATCAGTCTCATGCCACAAATCATTTATAGATTGCCG
AAGTCTGTGCTTTTCTGACATGGTAATATACCTTCCCCGC
NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGTTTCTTTCTATCTTTCTTTT
TTTTTTTTTTTGGAGGACCTGGGCCAAAGGGATGGGAGAGGGTAACGACT
GGAATGTAAATAAGTAAGACAATTTTTTAAAAGTATGAGGCAAAAATTTG
AACATAAACTTGTAGAGTTCTGCATATTTAAGATAAACTAACAAATTGGA
TTAATTCAGAATTTAAATTGTTATTCTGTAATAGGTTTATTGAGGTGACG
AGAGGAGAATTCTAGATGTTGTTATGATATTTACAAATAGCATAATATTC
TCATTATGACCTAAAAATTCAACTCCTAGACATTACCATAAAAAAATGAA
ACACATTCCTATTCAAACCTACACACGGTTGCTTATAGCCACAGCACTTT
GGCTTTTCAAACTAGAAAAAAATTTCTTTTTACAGTTAAAATATTTTAAC
TTTATTGAAATATTGTCAAAACATTTACTTTTTTCAGGAATTATTTGCTT
TCACCTTTTTTCCCATTTTTTATTAGGTATTTAGCTCTATACATTTCCCA
TGATATACCAAAAGTCCCCCATACCCACCACCCCCATTCCCCTACCCATT
TCATCCCCCTTTTTTGGCCCTGGCGGTCCCCCTGTACTGGGGCCTAGGAA
AGGTTTGCTAGCCCTCAGGGGCCCCCCCTCTTGCGCGGTGGGCCGCATTT
CCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no398_f18.g1 MSMg01no398_f18.g1 CHROMAT_FILE:
MSMg01no398_f18.g1 PHD_FILE: MSMg01no398_f18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:04 2005
         (239 letters)



>mm_chr9_91433231_91433872
          Length = 642

 Score =  333 bits (172), Expect = 7e-96
 Identities = 198/208 (95%), Gaps = 3/208 (1%)
 Strand = Plus / Plus

                                                                       
Query: 35  ggaggacctgggccaaagggatgggagagggtaacgactggaatgtaaataagtaagaca 94
           |||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||| |
Sbjct: 235 ggaggacctggggcaaaggggtgggagagggtaacgactggaatgtaaataaataagata 294

                                                                       
Query: 95  attttttaaaagtatgaggcaaaaatttgaacataaactt---gtagagttctgcatatt 151
           ||||||| ||||||||||||||||||||||||||||||||   |||||||||||||||||
Sbjct: 295 atttttttaaagtatgaggcaaaaatttgaacataaacttcttgtagagttctgcatatt 354

                                                                       
Query: 152 taagataaactaacaaattggattaattcagaatttaaattgttattctgtaataggttt 211
           ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 355 taagataaactaacaaattggattattttagaatttaaattgttattctgtaataggttt 414

                                       
Query: 212 attgaggtgacgagaggagaattctaga 239
           ||||||||||||||||||||||||||||
Sbjct: 415 attgaggtgacgagaggagaattctaga 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 642
Length adjustment: 9
Effective length of query: 230
Effective length of database: 633
Effective search space:   145590
Effective search space used:   145590
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)