BAC Information

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BAC

Clone NameMSMg01-398J16
Chromosome9 (Build37)
Map Location 48,359,868 - 48,360,105
singlet/doubletsinglet
Overlap genenone
Upstream geneCadm1, LOC100043303, D930028F11Rik, 4432416J03Rik, EG640268, EG434401, LOC667933, Rexo2, Rbm7, EG434402
Downstream geneNnmt, Zbtb16, Htr3a, Htr3b, Usp28, LOC100042785, Zw10, EG629400, Tmprss5, EG235327, Drd2, Ankk1, Ttc12, Ncam1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-398J16.T7 (MSMg01no398_j16.b1)MSMg01-398J16.TJ (MSMg01no398_j16.g1)
ACCAG498667AG498668
length796774
length of high quality
(start - end)
---239 (76 - 314)
definitionCHROMAT_FILE: MSMg01no398_j16.b1 PHD_FILE: MSMg01no398_j16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:23 2005CHROMAT_FILE: MSMg01no398_j16.g1 PHD_FILE: MSMg01no398_j16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCATTTTCCNNNCCCNNNNNAACCCNCTTTTTCCANAAAANNNNNNNNA
ANNNNNNNNTTNCCANAAACTACTGNCNNNNNCNNNNNCNNNCGGGGNAC
TTANCNCCCTGGCNTTANCCCANNNCAACNNNNGNCCNGNCCGGANGNCN
AACCNNNCCGANGGANCNACCCCNCNACTACCTANNNGGGGGGGGGGGGG
GGGTGGGGGGGGGGGGGGGGGGGGGGGGGATGATGANATGACTTTTTGTT
TTTTAGTTGGGGGGGGGGGGGGGGGGGGNNNNNNNNTNTAGGGGGGGGGC
TCTCCNNNNNNANNNNNNNNNNNNTTTTTTTTTNNNNNNNNCCCCCCCCC
CCCCCCCNNNCCCCCCCCCNCTCCCCCCCCCCNNNCCCCNNNNNNNNNNN
NCCCCCCTCCTTCCCCCCTTTTCCCCCCTTTTNNCCNNCNNCCCCCCNNN
CCNCCCCCCCCCCCCCCCCCTNCCCCCCCCCCCCCCCNNNNCCCCCCCCC
CCCCCCCCCCCCCCCNNNCCCCCCNCCCCCCCCCCCCCCCCNCCCNCCCN
NNNCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNCCCNCCCCCNCCC
CCCCCCCCCCCCCCCCCCCCCCCCNNTCCCCCCCCCCCCCCCCCCCCCCC
NCCNNNNCCCCCCCNCCCCCTCCCCCTCCCCNTCCCCCCCCCCCCCCCCC
CCCCCCCCCTTCCCNNNNNNCCTCCCCTTCTTCCCCCCTCCCCCCCCCCC
CCCCCTCCCCCCCTCCTCTTTCCTCTTATTGGCGGGGGGGGGGGGG
NCCGATGCTGTGGGAGGCCTGGGGGNCGCCTGTTTTCAAAATTTAGGTGA
ACTATAGAAGTACCAGCGAAATTCACAGCAATTCTCCTACCTCTGCCTCT
GAGGGCTGGGAGTCAGTTTGGCTGTAACAGAAGATCCAATTGAAAGGAGC
CTAAACTAGAGGATTGCAGAAATGCTACAGAAGTTAAGAGTGAGTAAGTA
CCTGCAAGCATGAGGACCTGCAAGCACTGAATCCCTGGCAACCATTATAA
ACAAAAAACCAGCAAAACAAAACAGGCATGGCTGGCCTGTAACCATAGGA
TTTGGTGGTAGGGTGTTTGTTTTNANNNNNNNNNNNNNNCNNTTNNNNNN
NNNNNTTNTTTTCCCCCTTTCCTTNTTTTTTTCCTTTCACTTCCCTTTCT
ATTTTCCTCCCCCCCCCCCGTGGTTCTCTCTTGTCTCTTCTTTCTCTCTT
CCTCTTTCCTTCCTCTTACCCCTTCTTCACCTCTCTTCTCCTCTCTTACT
CCTTCTCTTCTCTTCTTCCCCTCTTTTCCCCTCAATCTCCTTTTCTTCTC
CCCTCTTCTTTCCTCCTTTCTCTTCTCTTCTTTTTTTTTTCTCTTTTTCC
ACCTCTATTTTCTTGCCTATCCCCGCCCCCCATATTTCTCACCCTCCCTT
TTTTTTTTTTCTCTCCGCCCATCTTCTTTCTCCTCTTTCCCTTTTCTTCT
CTCCTTATCCCATTTCTCCTATCATTCATCTCTAATTATTTTTTTCTCTT
TTTCTATTCTTTCTTTTACCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no398_j16.g1 MSMg01no398_j16.g1 CHROMAT_FILE:
MSMg01no398_j16.g1 PHD_FILE: MSMg01no398_j16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:23 2005
         (239 letters)



>mm_chr9_48359668_48360306
          Length = 639

 Score =  445 bits (230), Expect = e-129
 Identities = 236/238 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagcaattctcctacctctgcctctgagggctgggagtcagtttggctgtaacagaagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagcaattctcctacctctgcctctgagggctgggagtcagtttggctgtaacagaagat 260

                                                                       
Query: 61  ccaattgaaaggagcctaaactagaggattgcagaaatgctacagaagttaagagtgagt 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 ccaattgaaaggagcctaaactagaggattgcagagatgctacagaagttaagagtgagt 320

                                                                       
Query: 121 aagtacctgcaagcatgaggacctgcaagcactgaatccctggcaaccattataaacaaa 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 aagtacctgcaagcatgaggacctgcaagcactgaatccctggcaaccattaaaaacaaa 380

                                                                     
Query: 181 aaaccagcaaaacaaaacaggcatggctggcctgtaaccataggatttggtggtaggg 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaccagcaaaacaaaacaggcatggctggcctgtaaccataggatttggtggtaggg 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)