BAC Information

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BAC

Clone NameMSMg01-398N09
Chromosome9 (Build37)
Map Location 114,538,769 - 114,539,121
singlet/doubletsinglet
Overlap geneCnot10
Upstream genePdcd6ip, Clasp2, Ubp1, Fbxl2, Susd5, EG665719, 4921528I07Rik, Bcl2a1c, 4930520O04Rik, Crtap, Glb1, Ccr4, Trim71, LOC100043808
Downstream geneLOC665772, Dync1li1, Cmtm6, Cmtm7, Cmtm8, Gpd1l, LOC100043813, Osbpl10, LOC100043812, Stt3b, LOC100039567, LOC670467, EG546164
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-398N09.T7 (MSMg01no398_n09.b1)MSMg01-398N09.TJ (MSMg01no398_n09.g1)
ACCAG498845AG498846
length787778
length of high quality
(start - end)
---483 (71 - 553)
definitionCHROMAT_FILE: MSMg01no398_n09.b1 PHD_FILE: MSMg01no398_n09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:41 2005CHROMAT_FILE: MSMg01no398_n09.g1 PHD_FILE: MSMg01no398_n09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTCCGCCCCTATACAACTCCCTATTCAATATAATNNNNGNAANTNANT
TTGTTCCATGCTCTANAGGNNTANANNCCANNTTGGNANANNANACATGG
NANGACTTGTTTGACTATGNNCANAACTTCANCTCCTCACCTCTAANTGA
CCAATGNNNNCAANATCTGANNCTGGNCAATCACCCTCCNCATGCTTCTN
NNNNNNNCNACCCTCAGTCTGTTTGCNNGTCCGGCTGTACCATCGGNNNA
AACCTTAANNAAACTCTCNNNCTACCCAATTATATCCNNNNNNTTTNNNC
CCGGTCGGACGGGTGGGGGGGGGGGCTGGGGGGGGGGAGAAGCGGGGGGG
GGGGGGGGGCGGGGGGGGCGGGGGGGGGGGGGGGTTTTCTNNNNNNNNNN
NACGNNNNNNNNTNTAGGGTGGGGGGGGGCTGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGTCTNNNNNNNNNNNNNNNNNNNNNNNN
GANGANNNNNNNCNNNNNNNNNNNNNNNNNNNNGNNGGGGGGGGGGGGGG
GGGGCGGGGGGGGGGGNNNNCTNNNTNNNTTTNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNAATAAATTTTGGTGGGGGGGANNNTTCTTTNN
NNNNNNNNNNNNNNNNNNNNNTNNNNNNTNNNNNNNNNNNNNTNTNTNTT
TTNTTNNNTNNNNNNNNNNNTNTTTTTNNTTTTTNNNNNNNNNNTNNNNN
TNNNNNNNNNNTTNTNTTTTTTATTGGGGGGGGGGGG
AATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAACCTAAAAGTGGGCAGGGGAAAGAAAATA
AATGAAAATGTTGGGCCAGTGAGATTGCTCAGAGGGTAGACGCACTTGTG
ACACAAGCCTGTCCTCTGGGCTCCATATGTGACTGACACTGGTCCACCCC
GTCGTCGTGTGCTGAAGAGATGCTCAGTCGTTCAAAGCACTGGCTACTGC
TCTCCCAGAGGACCTGGGTCTGGTTCCCAGCATCTGGGTGGTAGCTCACA
AGCATCTGTATTNCTAGNTCTGGGGCATCCAATGCCCTCTTCTTGCCTTT
GAGGTGTACATGCATACCTGCAGGCACACACACGGGAAATAAAAACAAAA
TCCTTTTTAAAGGCTTATTCTAACCACCTACTGCAATGCAGCCGCTTGGG
TTTTGTTGCTTGCTATTTTTTAAAACAGAATTGTTATTCCATGAGACTAG
ACCCTTAAATATACCCTGGTTTTGGACAACATAATTAAGACTAATCTCTC
TCATTTATAAGATAAATATTTGTATTCTCACTATGAAGCTTTGGGGACTA
ATTAAAACCTGAAGGTACTATTTTTGCCCTTGGCTTTTTTTTTTTTTTTT
TTTTTTTCTCCCTTCACACATTTTCTTCCTGCTCCTTCTGTCGCCCTTTT
AAACTTTTCTTTTTAACAACACTCTTTGCCCCCGTTAATTCTACCGATTT
CGTTCACCTTTTTTTCTTCCTTCCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no398_n09.g1 MSMg01no398_n09.g1 CHROMAT_FILE:
MSMg01no398_n09.g1 PHD_FILE: MSMg01no398_n09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:41 2005
         (483 letters)



>mm_chr9_114538240_114539122
          Length = 883

 Score =  650 bits (336), Expect = 0.0
 Identities = 349/355 (98%), Gaps = 4/355 (1%)
 Strand = Plus / Minus

                                                                       
Query: 131 gtcgtcgtgtgctgaagagatgctcagtcgttcaaagcactggctactgctctcccagag 190
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 882 gtcgtcgtgtgctgaagagatgctcagtggttcaaagcactggctactgctctcccagag 823

                                                                       
Query: 191 gacctgggtctggttcccagcatctgggtggtagctcacaagcatctgta--ttnctagn 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||  |  |||| 
Sbjct: 822 gacctgggtctggttcccagcatctgggtggtagctcacaagcatctgtaact--ctagt 765

                                                                       
Query: 249 tctggggcatccaatgccctcttcttgcctttgaggtgtacatgcatacctgcaggcaca 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 tctggggcatccaatgccctcttcttgcctttgaggtgtacatgcatacctgcaggcaca 705

                                                                       
Query: 309 cacacgggaaataaaaacaaaatcctttttaaaggcttattctaaccacctactgcaatg 368
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 cacacgggaaataaaaacaaaatcctttttaaaggcttattctaaccacctactgcaatg 645

                                                                       
Query: 369 cagccgcttgggttttgttgcttgctattttttaaaacagaattgttattccatgagact 428
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 cagccgcttgggttttgttgcttgctattttttaaaacagaattgttattccatgagact 585

                                                                  
Query: 429 agacccttaaatataccctggttttggacaacataattaagactaatctctctca 483
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 agacccttaaatataccctggttttggacaacataattaagactaatctctctca 530


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space:   412929
Effective search space used:   412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)