BAC Information

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BAC

Clone NameMSMg01-399E17
Chromosome9 (Build37)
Map Location 58,413,383 - 58,596,835
singlet/doubletdoublet
Overlap geneNptn, 2410076I21Rik
Upstream geneScamp2, Ulk3, Cplx3, Lman1l, Csk, Cyp1a2, Cyp1a1, Edc3, Clk3, Arid3b, LOC665235, LOC677423, LOC100039509, Ubl7, Sema7a, Cyp11a1, 4930535E21Rik, Stra6, Islr, Islr2, LOC665268, Pml, Stoml1, Loxl1, Tbc1d21, 6030419C18Rik, Cd276
Downstream geneHcn4, Neo1, LOC100040186, EG665330, Adpgk, Bbs4, Arih1, LOC621119, 4930425N13Rik, Hexa, Brunol6, Parp6, Pkm2, 4933407I18Rik, Gramd2, Senp8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399E17.T7 (MSMg01no399_e17.b1)MSMg01-399E17.TJ (MSMg01no399_e17.g1)
ACCAG499191AG499192
length735739
length of high quality
(start - end)
514 (78 - 591)128 (102 - 229)
definitionCHROMAT_FILE: MSMg01no399_e17.b1 PHD_FILE: MSMg01no399_e17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:16 2005CHROMAT_FILE: MSMg01no399_e17.g1 PHD_FILE: MSMg01no399_e17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,596,322 - 58,596,835)(58,413,383 - 58,413,510)
sequence
GTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATACCCGCAGGTCCG
CGGAATTCTTAATCATTTACCCAAACAACAACAACAACAACAAAAAACAG
TCCCCCAAACATAGCAGAAAGCATACTGTAAAACAGACATATGCTTACAA
AATGGAGGTAAAATCCTCTGTCTGACCTTCCTAGGGGACTGTAATCTCCT
TGAAGGGGATTACAAGGAGCTGCCTACCTGCTGTCTAGTGTGACTGTTTC
CAGAAGTCACACACTCAGGGCTGAGTGAGGACAGGCTGAGCTATATGAGC
AGCAAACCCTGCGTCCTGTAAGCTCTGTTACGACGCGCCCCCAGTGTGGT
AGCAGAGGCCCTGTGAACACAGGGCGCAGAAGGGTGGACTTTTATGTCTT
GTGATAAAATTTATACAGCATGACCCTCATTATTTTCAAGATTTCCATTA
TAATGTACCAGGCAAAACTGTCCTCTGACCTCCAAATGCACTCTGTGGCA
CATATGCGCATCAACAAATAACATATAATTTTATATATACATATATAATT
TTCCTGAAGGAGGGGATTTTCATTCTAAAAGTACATTGGGATGCCCTCAT
AGACAAAGTGTTTCGTGCAGGCAAACAGCACAAGTATCCCTGATCACCCA
TAGCGGTCGCCCTAAACCTGACCTGCCAGCTTCTTCAGGTGCTCGCCTAT
CTTCTGCTGCATGCGTGGTGTGCCTTCAGTGTTTG
CAATGAAGCGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTAGGTAGTCTCAGGAGTATGAT
AAGTTCTAAGTGATCCTCAGTTACATATTACCTTTTAGATCAGTCTGATA
CACATGATACTCTGACTCATAAGAAACATTTTAAAGAGAATTTATGTCTT
TGGAGAAAGTAAGGAGGAGCTTGCTGTTATTATAAAAAAGGTAGTAATAG
GAAAATTGGAAATATTGAAATTTACAAAATGAATTGCCTAGCTGGCATAA
ACCTGTAATACTAGAACTTAGGAGGCACGTATAAGGAGCATCATCCTGTC
CCAGCTAGTTCTTGTTACAGGATATTTGAATATTGTTTGCATAAAACCTA
ACTGTTAGCAAAATATACTAGCTCACAAAGATATCGTGTCGTCTACCCGC
TCTAATTGTCCTCTACATAAGCAGTTTGGGAGTACTTCTAAACGTCTTCA
TATCTTAGAATGCTCACAGATGGAACGTTCCCGTCTGCTCTAATGCATGT
TGCTTACGAGAAGCTGTGCTGTCTCCCCGCTCTATGATCTGAGGTTTAGC
CGTATTTATCCTTCTATTCCGGTTAAATGGTTTAATTCTACTTACTTGCG
CTTGTCACCCTCCCTATTTTTGCCCCTTATTTGTTTTTTTTTTTTCCTTG
CAATCTCGACCTTTTCCCCTTTTTTCCCCCTCCCCCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_e17.b1 MSMg01no399_e17.b1 CHROMAT_FILE:
MSMg01no399_e17.b1 PHD_FILE: MSMg01no399_e17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:16 2005
         (514 letters)



>mm_chr9_58596249_58597162
          Length = 914

 Score =  917 bits (474), Expect = 0.0
 Identities = 504/514 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acaacaacaacaacaaaaaacagtcccccaaacatagcagaaagcatactgtaaaacaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 acaacaacaacaacaaaaaacagtcccccaaacatagcagaaagcatactgtaaaacaga 528

                                                                       
Query: 61  catatgcttacaaaatggaggtaaaatcctctgtctgaccttcctaggggactgtaatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 catatgcttacaaaatggaggtaaaatcctctgtctgaccttcctaggggactgtaatct 468

                                                                       
Query: 121 ccttgaaggggattacaaggagctgcctacctgctgtctagtgtgactgtttccagaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 ccttgaaggggattacaaggagctgcctacctgctgtctagtgtgactgtttccagaagt 408

                                                                       
Query: 181 cacacactcagggctgagtgaggacaggctgagctatatgagcagcaaaccctgcgtcct 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 407 cacacactcagggctgagtgaggacaggctgagctatatgagcagcaaaccctgggtcct 348

                                                                       
Query: 241 gtaagctctgttacgacgcgcccccagtgtggtagcagaggccctgtgaacacagggcgc 300
           ||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 347 gtaagctctgggacgacgcgcccccagtgtggcagcagaggccctgtgaacacagggcgc 288

                                                                       
Query: 301 agaagggtggacttttatgtcttgtgataaaatttatacagcatgaccctcattattttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||
Sbjct: 287 agaagggtggacttttatgtcttgtgataaaatttatacagcatgaggttcattattttc 228

                                                                       
Query: 361 aagatttccattataatgtaccaggcaaaactgtcctctgacctccaaatgcactctgtg 420
           ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 227 aagatttccattataatgtgccaggcaaaactgtcttctgacctccaaatgcactctgtg 168

                                                                       
Query: 421 gcacatatgcgcatcaacaaataacatataattttatatatacatatataattttcctga 480
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 gcacatatgcgcattaacaaataacatataattttatatatacatatataattttcctga 108

                                             
Query: 481 aggaggggattttcattctaaaagtacattggga 514
           ||||||||||||||||||||||||||||||||||
Sbjct: 107 aggaggggattttcattctaaaagtacattggga 74


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no399_e17.g1 MSMg01no399_e17.g1 CHROMAT_FILE:
MSMg01no399_e17.g1 PHD_FILE: MSMg01no399_e17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:16 2005
         (128 letters)



>mm_chr9_58413183_58413710
          Length = 528

 Score =  224 bits (116), Expect = 1e-63
 Identities = 125/128 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttctaagtgatcctcagttacatattaccttttagatcagtctgatacacatgatact 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 agttctaagtgatcctcagttacatattaccttttagatcagtctgatacacatgagact 260

                                                                       
Query: 61  ctgactcataagaaacattttaaagagaatttatgtctttggagaaagtaaggaggagct 120
           |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgactcaaaagaaaaattttaaagagaatttatgtctttggagaaagtaaggaggagct 320

                   
Query: 121 tgctgtta 128
           ||||||||
Sbjct: 321 tgctgtta 328


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 128
Length of database: 528
Length adjustment: 8
Effective length of query: 120
Effective length of database: 520
Effective search space:    62400
Effective search space used:    62400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)