BAC Information

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BAC

Clone NameMSMg01-399M19
Chromosome9 (Build37)
Map Location 19,631,704 - 19,631,956
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr829, Olfr830, Olfr831-ps1, Olfr832, GA_x5J8B7W6RL5-13870817-13871726, Olfr834, Olfr835, Olfr836, Olfr837, GA_x5J8B7W6RL5-13695863-13696754, Olfr839-ps1, GA_x5J8B7W6RL5-13645512-13646298, Olfr841-ps1, Olfr842-ps1, Olfr843, Olfr845, Olfr1522-ps1, Olfr846, LOC665697, Olfr847, GA_x5J8B7W6RL5-13451244-13452122, Olfr849, Olfr850, Olfr851, Olfr852-ps1, Olfr853, Olfr854, Olfr855, Zfp75, EG624341, LOC665751, Olfr857, Olfr858-ps1, Olfr58, Olfr859
Downstream geneOlfr860, GA_x5J8B7W6RL5-13004417-13003354, Olfr862, Olfr77, EG665823, Olfr863-ps1, Olfr864-ps1, Olfr865-ps1, Olfr866, Olfr867, Olfr868, Olfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873, Olfr18, Zfp560, 4921534A09Rik, EG624824, Zfp26, Zfp426, 5730601F06Rik, 7030419G21Rik, LOC100041205, 2210010B09Rik, 5730577I03Rik, Fbxl12, Ubl5, Pin1, Olfm2, Col5a3, Rdh8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399M19.T7 (MSMg01no399_m19.b1)MSMg01-399M19.TJ (MSMg01no399_m19.g1)
ACCAG499575AG499576
length735735
length of high quality
(start - end)
592 (74 - 665)251 (74 - 324)
definitionCHROMAT_FILE: MSMg01no399_m19.b1 PHD_FILE: MSMg01no399_m19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:54 2005CHROMAT_FILE: MSMg01no399_m19.g1 PHD_FILE: MSMg01no399_m19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:54 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAATCCGCGG
AATTCCATATAATTCTCGAGACACTGAAACTTATAGAGGAAAAAGTGGGG
AAAAAGCTTTGAAGATATGGGCACAGGGGAAAAATTCCTGAACAGAATAG
CAATGGCTTATGCTGTATGGTCAAGAATAAGATAATGGGACTTCATAAAA
CTGTAAAACATCTGTATGGCAAAAGACACTGTCAATAAGACAAAAAGGTC
ACCAACAGCCTGGAAAAGCATCTTTACCAATCCTAATTACAATAGAGGAC
TAATATCCAATAAATGTAAAGAACTCTTGAAGCTGGATTCCAGAAAATCA
AATAACCTTATTAAAAATGGGGTATGGGAGGGACACAAGTCCCTTCCATT
TGGCCTCAGCACCAGGTAACCCACCCCGAGGAGTCAGCGGATACCTCCAC
AGTCCCTAGATGACTCTGCACGAGATCGTAGGATCACTGATGAGCAGAAC
ACAACATCTGTTCCAATTCAATTATGAAGGGCCTGTGACAGCAGGAACAA
GGACACTGGAGCCCTTCCTGACCAGAGGCTCAGGATCCTTTTGATCAGTA
TTGGTTTACCTTGGTTTCGAACAGACCAGACAGCTACATGGCCCTCAAAG
AAGAGGACTTTCAGGCACTGTAACACGCCCAGTATCCTAGGACAACAGGA
TCCCAGAATAACAGGAGTAGGCCAGACCAGTATTN
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATGTCTCAAAAAGTGAAAAGAATTGTT
TAACACAATTAAAAAAAAGCCTTTGTAACATCATACAAAATAGATCATAA
TGCATCTAGGCAATTATTCTAATGGTTATACACATCTATATATTTGAATT
CTGACATCTTCAGGACACAAATAAATAGTTATACAGATTATCAGACCTCC
ATATATAGAATGCATTTAGAAACACATATGTATATTTATATGTGCATATA
ATCACCATCAATGAAAAGAGAGGCAACGAATTAGAAACAGATAAAAGAGA
AGTATAAGGAGGGGTTTAGAGAGAGCCATCTTGTTTCCCGGGTCCCTCAG
AGACCAGTCTGCACAGAACACCATATGTACTGCCTAAGCAATACAGCTTC
TGATACAGGCCCCTTTTCGGGTCTTCATCTTCATCCAGGAGGTAGATCTG
AGTGCCACACCTCTGTGCTCCTTCCCTGCCAGAGGAGAGCTTGCCTGCAC
AGAGCCCTCTGATTACCGACACTCCGGATAGAGTTGTATTCCCAGCAGTG
TTGATCGAAGCTACCCGAATCATATGATGAACAGGCCACTGCCCGAGACT
GCCATCCTAACTATCCCCCTATTATTACCTTATGTTTATCCGTTACTGCA
CGAAATTTTTCCCTTTTCTTTCCTTAACCACTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_m19.g1 MSMg01no399_m19.g1 CHROMAT_FILE:
MSMg01no399_m19.g1 PHD_FILE: MSMg01no399_m19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:54 2005
         (251 letters)



>mm_chr9_19631569_19632221
          Length = 653

 Score =  371 bits (192), Expect = e-107
 Identities = 238/254 (93%), Gaps = 4/254 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgtctcaaaaagtgaaaagaattgtttaacac--aattaaaaaa-aagcctttgtaaca 57
           ||||||||||||||||| |||||||||||| ||  || ||||||| || |||||| ||||
Sbjct: 388 atgtctcaaaaagtgaagagaattgtttaatacttaa-taaaaaataaacctttgcaaca 330

                                                                       
Query: 58  tcatacaaaatagatcataatgcatctaggcaattattctaatggttatacacatctata 117
           ||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tcatacaaaatagtttgtaatgcatctaggcaattattctaatggttatacacatctata 270

                                                                       
Query: 118 tatttgaattctgacatcttcaggacacaaataaatagttatacagattatcagacctcc 177
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 269 tatttgaattctgacatcttcaggactcaaataaatagttatacagattatcagaactcc 210

                                                                       
Query: 178 atatatagaatgcatttagaaacacatatgtatatttatatgtgcatataatcaccatca 237
           || ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 209 atgtatagaatgcatttagaaacacatatgtatattcatatgtgtatataatcaccatca 150

                         
Query: 238 atgaaaagagaggc 251
           ||||||||||||||
Sbjct: 149 atgaaaagagaggc 136


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 653
Length adjustment: 9
Effective length of query: 242
Effective length of database: 644
Effective search space:   155848
Effective search space used:   155848
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)