BAC Information

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BAC

Clone NameMSMg01-399P07
Chromosome9 (Build37)
Map Location 31,210,601 - 31,210,942
singlet/doubletsinglet
Overlap geneNfrkb
Upstream geneSnx19, LOC666478, Adamts15, Adamts8, Zbtb44, BC038156, St14, Aplp2, EG638580, EG666539, Prdm10
Downstream geneTmem45b, LOC666558, EG666576, Barx2, LOC100042266, Tpi-rs4, LOC666619, LOC666622, Grit, Kcnj5, Kcnj1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399P07.T7 (MSMg01no399_p07.b1)MSMg01-399P07.TJ (MSMg01no399_p07.g1)
ACCAG499694AG499695
length677735
length of high quality
(start - end)
342 (46 - 387)239 (87 - 325)
definitionCHROMAT_FILE: MSMg01no399_p07.b1 PHD_FILE: MSMg01no399_p07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:05 2005CHROMAT_FILE: MSMg01no399_p07.g1 PHD_FILE: MSMg01no399_p07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GACTCACATACGGGAGCGGAGCCGCGGAATTCTTNATGCACAAAAGAACT
GACTATGTGGTTCGGCCTAGCACAGGAGAGGAGAAACGGGTTTTTCAAGA
ACAGGTAAGATCTCCTTAGAAGTAAGTAGACACAGAAGCACTGAGCCTGG
CTTTCCTTGATCTCAACTCCTTGGGGTTCAGAGCCTTCAATCCAGATAGT
TCATTGGTCGAGGCTGTTTGTTGGGGTAGAAATAGTTTGGTGAAAGGGTA
AGAAAACTTTTGACTATCTTTTTTACCAGCTAGCAAATTGTTTTTTCCTT
TCTTGTCATATTTTGGGTGTCCATCTGTGGACTGTCTTTTCCCACTGCGG
TTGGTCACTGTTCTTTGTGAGGCCACTCCTTTCCTCCCCCCACTGACGTC
TCATTTGATCGATCTAAGGGAGTTCTAGGTAGAACTCCGCTAATTCTGAA
ATATCAATTTTTTGCCTGTTTTTTTTGTTTTTTGGCATTAGCGTTACCGG
TATATTCAATCCCGTAAGGCACTCTCCTTTCGCATGTTTGGATTTGAGTC
TGGGTTGGCGCCAGTGAATGTCGCGTTTGACCAGGACCACTCCCTCAGCT
AACGCTCGGGTTGCTTCTTTGTTTGCCCTCCGATTGTTCTGTTTATGCGC
CCTCCCGCCCCCCGCCATTCTTCTTGC
TATCCCTACTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATAAAAATGATTG
AAACTGGAACTGGAGAGATGCCTCAGTAGCTAAGGGCACAGGCTGCTCTT
GAAGAGGACCAGGGTTTGATTCCCAGCACTCACCTGTGACAGCTCCCAAC
CACAGCAGCAACCGCAGTTCTAGGAGAGCTCTGGCCTCCTCCAGCACTAC
ATGTAATACACACATAATTTGTTTAATCAAACTCTGTGCATGACTGCATG
TTGTGTGTGTACATGCCTCTGTGCGTGTGCGCGTGCGTGTGTATGTGTGT
GACTAGAGACTAGTGACAGGTCAGAGCAGTGCGGCGAAAGGAAAAGAATG
GGATTGATTATGCATGTTTCTTTCCACCCACATACTTGAAGGAAATTGTT
TCTTTGAAGTATATTACTATGTAACAATTTTCGCTTCACTGAATCTATCC
ATATAAAGATGTTTTTGCCCCTATATTACCGAGTCTTTTTCTGCCTTTGT
TATCGCTTTGCACTTTTTTGCTGCCCCCTCCCTGCATTGCTGCCATACTT
TCTCTTCACTACTGCATTATGCTCCATACAATCCAGTAAACTCTCAACGT
ATTCTGCAATACTTTCCTCTCTTATTTCCCACCTCCCTTCTTCCCATCTT
TTCCTCCCTTTCTTCATAAGTGCTTCTATTTAACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_p07.b1 MSMg01no399_p07.b1 CHROMAT_FILE:
MSMg01no399_p07.b1 PHD_FILE: MSMg01no399_p07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:05 2005
         (342 letters)



>mm_chr9_31210401_31211142
          Length = 742

 Score =  615 bits (318), Expect = e-180
 Identities = 336/342 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaactgactatgtggttcggcctagcacaggagaggagaaacgggtttttcaagaacagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaactgactatgtggttcggcctagcacaggagaggagaaacgggtttttcaagaacagg 260

                                                                       
Query: 61  taagatctccttagaagtaagtagacacagaagcactgagcctggctttccttgatctca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taagatctccttagaagtaagtagacacagaagcactgagcctggctttccttgatctca 320

                                                                       
Query: 121 actccttggggttcagagccttcaatccagatagttcattggtcgaggctgtttgttggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actccttggggttcagagccttcaatccagatagttcattggtcgaggctgtttgttggg 380

                                                                       
Query: 181 gtagaaatagtttggtgaaagggtaagaaaacttttgactatcttttttaccagctagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtagaaatagtttggtgaaagggtaagaaaacttttgactatcttttttaccagctagca 440

                                                                       
Query: 241 aattgttttttcctttcttgtcatattttgggtgtccatctgtggactgtcttttcccac 300
           || ||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 aaatgtattttcctttcttatcatattttgggtgcccatctgtggactgtcttttcccac 500

                                                     
Query: 301 tgcggttggtcactgttctttgtgaggccactcctttcctcc 342
           | ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 tacggttggtcactgttctttgtgaggtcactcctttcctcc 542


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space:   244089
Effective search space used:   244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)