BAC Information

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BAC

Clone NameMSMg01-400E10
Chromosome9 (Build37)
Map Location 29,046,678 - 29,047,127
singlet/doubletsinglet
Overlap geneHnt
Upstream geneOpcml, LOC625222
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-400E10.T7 (MSMg01no400_e10.b1)MSMg01-400E10.TJ (MSMg01no400_e10.g1)
ACCAG499938AG499939
length7941,289
length of high quality
(start - end)
454 (69 - 522)---
definitionCHROMAT_FILE: MSMg01no400_e10.b1 PHD_FILE: MSMg01no400_e10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:32 2005CHROMAT_FILE: MSMg01no400_e10.g1 PHD_FILE: MSMg01no400_e10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGACAATCCGCGGAA
TTCACTGTGCATTCCCGGCAGTCTTGAACTTGAGTTTCTCCTTATTTAGC
TTCCTAACAGCTAGAAGTAGAGGTATCTTTCACAACAGCCATCTCTCAAC
TGGCTAATAATGCAAAACCGCATGGCATCTGATTCTAGTCCTAATGGTTA
CTGCAGACAGCCAACTACAAAGTCCTATGCAGTTTGTTAGCTATAGGAGC
ACATGCCTGAACCGATGTCCAAAACAACCTTCAGAATTGTGTGCAGCAGT
ACAGTGGCTGGCACACAGCATGAAAATATCTCAGCTCTATTTGTGTCCTG
TGCCCTCTTTGCCCATCACAGCTGCCACCTGGCAAAGGAAGGGTTGTGTG
CCCCTCCCCAACCCATGAGAGCTGAACCAGAAAAGACATTTCTTCATGAT
GTTACGGTCTCCCTCTCTGCTCAGACCTACTGCTTCCCTGGGTAGAGACT
CATTAAACCATCTGCACTCTCAGCCTGTCATCTCTTGCTGTCCAATGAGC
CTCGCTTCTCTTCCCAGTCAGTGTTCTATCTCATGGGCCTCCCAAGATCC
TTGGGTCCACTCCCAGTGACCTGAAATAATTACTCCCTCCATGGCCCCCC
CGCCCTTGTGCTTCAGGACGTAAATAAAAAAATTCTTTCCCCCCTGCGAA
GCCCCCTAATCCAAAAGGTCCCTCCCTCCTCTTAATACCAACAAACTTGT
TTCTCCTTTTATTCCATTCCCCCAGTTCCTCTCCCAAAAACAAG
AAATGATATTTGGGGTGTNGTTTGTGGTGTGTTGGATATGATATATCCAA
AGATTTTATGGTGGATTTCTATTGGTATAGTGATTCCGCCGTGAAATTAC
TATTTCTCTGATCGGAATGAACAGAGACAGAAAAGAGCTAGAAGAATGAG
AGTAACTAAATGAGAAACATAAGACAAATTCATAGTGCTGTGTGAGACGT
ACTATTGTATATATTAGGATTATGTATTGTGTTGGCGATGCACTGGGTGA
TGGTGTGGATGGTGTGTTCTACTGATGCGTGTGTAGCTAANGTANAGGAT
ATAGTGTGTATTATACTATGTATACTCCTCGTATGACGTCTTATATATAA
TTTGTTGATGTATTATGTATGATAATTATAAAACTGACATTATAACGATA
AGGATCGTGGTATGTGTTGTTATCAATATATATTGTGATGAGCTGGTAGA
TGTTGCGACACTCCGCGGCTGTCATTGTGTATCTTATCTACGAACTATAT
TATTAATAGTATAAGAACGAATGCTATGATCGATATTAGCGATAATCATT
AGATAATGATAAATAGAAACTANCATCGAACTGTATGAGTAATTGATTGA
GTGACAACGAATTCGTTTCGTGTATGTATTCGAGTCGTTAATATAGATTA
TAACAAGATATATCGCGTAAAGAATAATATCGTCAACGAATATTAAGCGT
ATTAGTTAAGCGATTAGTCTCGGTTACGATTAGATGATGAACGCGTTTAT
AATTAGTTCGATTGATGAGATCGTGTAGCGGTCGAATATTAGCGATGTTC
GTGAGCGCTATATACGTTACGATTTGCGCTCGTATCGTGTATCGATTGTA
CAACGTTAATCGAGTATCGCGAGAGACGCGTTTTTAGAGTTCACGATATA
GAAGTNTGAATTTCGAGATGTAATAATATTCGCTAAGTTACGCATATATT
AGTTCGATATCATGTCGTTATGAGATTTATTAGTCATATAGATCGATCGT
GTATATGAGTACAGATTTGAATNATATTCGANACGATNANCGTTATATAT
TTCGATCATATAGAATAAGTCGGATATTGTTGCGCTACTCTTAACTCGTA
TACGCGACAATGATCGAGGATATAATAGTATATATACACTTAGAATATGA
CATACGATATTATGACGTATAATTCTGGGAGTAGTCCGCAGTAGAGAGAT
CGAGATAGAGAAGTAATGAAATGGCGAGTATCGTGATGGAGTATGACGTG
TATTAATAATATGAGATATGTATGCAATGAGATCGATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no400_e10.b1 MSMg01no400_e10.b1 CHROMAT_FILE:
MSMg01no400_e10.b1 PHD_FILE: MSMg01no400_e10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:32 2005
         (454 letters)



>mm_chr9_29046474_29047327
          Length = 854

 Score =  808 bits (418), Expect = 0.0
 Identities = 442/450 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   cttgaacttgagtttctccttatttagcttcctaacagctagaagtagaggtatctttca 64
           ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 654 cttgaacttgagtttctccttatttagcttcataacagctagaagtagaagtatctttca 595

                                                                       
Query: 65  caacagccatctctcaactggctaataatgcaaaaccgcatggcatctgattctagtcct 124
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 594 caacagccatctctcaactggctaataatgcaaaactgcatggcatctgattctagtcct 535

                                                                       
Query: 125 aatggttactgcagacagccaactacaaagtcctatgcagtttgttagctataggagcac 184
           |||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 534 aatggttactgccgccagccaactacaaagtcctatgtagtttgttagctataggagcac 475

                                                                       
Query: 185 atgcctgaaccgatgtccaaaacaaccttcagaattgtgtgcagcagtacagtggctggc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 atgcctgaaccgatgtccaaaacaaccttcagaattgtgtgcagcagtacagtggctggc 415

                                                                       
Query: 245 acacagcatgaaaatatctcagctctatttgtgtcctgtgccctctttgcccatcacagc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 acacagcatgaaaatatctcagctctatttgtgtcctgtgccctctttgcccatcacagc 355

                                                                       
Query: 305 tgccacctggcaaaggaagggttgtgtgcccctccccaacccatgagagctgaaccagaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 354 tgccacctggcaaaggaagggttgtgtgcccctccccaacccatgagagctgaaccacaa 295

                                                                       
Query: 365 aagacatttcttcatgatgttacggtctccctctctgctcagacctactgcttccctggg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 aagacatttcttcatgatgttacggtctccctctctgctcagacctactgcttccctggg 235

                                         
Query: 425 tagagactcattaaaccatctgcactctca 454
           ||| ||||||||||||||||||||||||||
Sbjct: 234 tagtgactcattaaaccatctgcactctca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space:   374736
Effective search space used:   374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)