BAC Information

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BAC

Clone NameMSMg01-400P12
Chromosome9 (Build37)
Map Location 90,441,723 - 90,441,941
singlet/doubletsinglet
Overlap genenone
Upstream geneAF529169, Tmed3, B230218L05Rik, Rasgrf1, Ctsh, Morf4l1, LOC621414, Adamts7, Tbc1d2b, LOC100039777
Downstream geneLOC100039925, EG434428, LOC621576, Zic1, Zic4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-400P12.T7 (MSMg01no400_p12.b1)MSMg01-400P12.TJ (MSMg01no400_p12.g1)
ACCAG500465AG500466
length782787
length of high quality
(start - end)
212 (332 - 543)220 (334 - 553)
definitionCHROMAT_FILE: MSMg01no400_p12.b1 PHD_FILE: MSMg01no400_p12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:27 2005CHROMAT_FILE: MSMg01no400_p12.g1 PHD_FILE: MSMg01no400_p12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTAGTCCTCATGTCACTATACGACTCACTATATTTCGAAAATCCGCGGA
ATTCTTTGTTTTTTTCCGAAACACATTTTTAATGGGGTTATTTGATTTTC
TGGAGTCCACCTTCTTGAGTTCTTTATATATATATATATTGGATATTAGT
CCCCTATCTGATTTAAGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGG
CCTTTTTGTCTTCTTGACGGTGTCTTTTACCTTACAGAAGCTTTGCAGTT
TCATGATTTCCCATTTGTCAATTCTTACAGCACAAGCCATTGCTGTTCTA
TTCAGGAATTTTCCCCCTGTGCTTTNATCNTCGATGCTTTTCCCCACTTT
CTCCTCTATAAGTTTTAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCC
ACTTAGATTTAACCTTAGTACAAGGAGATAGGAATGGATTGATTCACATT
CTTCTGCATGTTAACAACTAGATGTGCCAGCACCATTTGTTGAAAATGCT
CTCTTTCTTCCACTGGATGGTTTTAGCTTCCTTGTCAAAGATCAAGTGAC
CATAGGTGTGTGGGTTCATTTCTGGGGCTTCTATTCTATTTCCATTTGTC
TAATTGTCTGTCAGAATTACAGTACCATGCTTATTTTATCTCACTTGCTC
TGTTTTAAAGCCTTTATTCTCTTTTTTTTGATTTCCCCCAGAAGGTCTTT
TTTACCTTGAAATACAGCTTTCGCATTCTTATTTTTTTTCGATGTTCCAC
TAGTTTCTTTGCGCTTCTCTTCTCCCATACCG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATCTGAAAAAATAGGTGTAGTTTTTATTT
CTTTCTTTTGAATGTACATATAAAATATCTATTTATACTTTATTTGAAGC
CACTCTTTTACACTGCATTTGTTCTTGGGGTTTTTTTTAAATCATGTATG
ATTAAAAGGGGGTAAAATAGTTCTATGAAATCTTTTTTTCTAGTTACAAT
CATAGCATGTATGTCAAGTCAAATTAAGTCATATTATTGCTTATATAATG
AGAATATATGCAAATACATCTTGATTATTGTTGAAGTTCTCACAATTGTC
CCACATTCTCAGCTGCTTTTGACAAGCCATGTCCTAAAAAAAAAAAATAA
GAAAAAAAATAAGCTTTTTAATGTAGGTGGTTTTGCAATGAAGGAAGTTA
TTTAAAAGACCAAAATGGTAAAAACAGCTTGGAATGATGTTGGCTGTGAA
CCAGCCAGGAACCTGGATTTCATTCTGTGAGCAGAATGATACTATTGAAG
ATACTGGTCTGTGGAAGCACATGATAAAAATAAAGTTTTGCTAAAATTTT
TCCTGCACAGAAATCCTCACCTAGTGAGAGAAGATCTGTCCCAAGTTATC
CATCCCCACAGTAAGGGGTATATTTAATATAAGATTTTTACCCTACTTAA
CACGCACTTCCAGTGGTTGGGCCATTACCAAATTATTCCTATCTGTTTTG
TCCACCAACTTCAATACTTTTTAATATTTAACAAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no400_p12.g1 MSMg01no400_p12.g1 CHROMAT_FILE:
MSMg01no400_p12.g1 PHD_FILE: MSMg01no400_p12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:28 2005
         (220 letters)



>mm_chr9_90441444_90442063
          Length = 620

 Score =  418 bits (216), Expect = e-121
 Identities = 219/220 (99%), Gaps = 1/220 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagttctcacaattgtcccacattctcagctgcttttgacaagccatgtcctaaaaaaaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 498 aagttctcacaattgtcccacattctcagctgcttttgacaagccatgtcct-aaaaaaa 440

                                                                       
Query: 61  aaaataagaaaaaaaataagctttttaatgtaggtggttttgcaatgaaggaagttattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aaaataagaaaaaaaataagctttttaatgtaggtggttttgcaatgaaggaagttattt 380

                                                                       
Query: 121 aaaagaccaaaatggtaaaaacagcttggaatgatgttggctgtgaaccagccaggaacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aaaagaccaaaatggtaaaaacagcttggaatgatgttggctgtgaaccagccaggaacc 320

                                                   
Query: 181 tggatttcattctgtgagcagaatgatactattgaagata 220
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tggatttcattctgtgagcagaatgatactattgaagata 280


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 220
Length of database: 620
Length adjustment: 9
Effective length of query: 211
Effective length of database: 611
Effective search space:   128921
Effective search space used:   128921
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)