BAC Information

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BAC

Clone NameMSMg01-401J07
Chromosome9 (Build37)
Map Location 27,621,447 - 27,832,440
singlet/doubletdoublet
Overlap geneOpcml
Upstream geneGlb1l3, Gm1110, LOC330907, Acad8, Thyn1, Vps26b, Ncapd3, Jam3, Igsf9b, Spata19, LOC666440, LOC100041202
Downstream geneHnt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401J07.T7 (MSMg01no401_j07.b1)MSMg01-401J07.TJ (MSMg01no401_j07.g1)
ACCAG500932AG500933
length730735
length of high quality
(start - end)
293 (330 - 622)228 (90 - 317)
definitionCHROMAT_FILE: MSMg01no401_j07.b1 PHD_FILE: MSMg01no401_j07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:14 2005CHROMAT_FILE: MSMg01no401_j07.g1 PHD_FILE: MSMg01no401_j07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,832,148 - 27,832,440)(27,621,447 - 27,621,674)
sequence
NNNNCATTCAAATTTGCGGCGCTAAACGATCACTATTCATATCTGAGGGC
GGAATTCAGTATGTGCGATAACAAGATCTGTGAGGGAGCTGTGGGTGGGT
ATAGACACATCTTGCATGTTTAACTATCTAATAGTGACTGTAAGTGCTAG
AGACACTAAGAAAAGTGGGAGCTCATTGTAATCAAGGGTCGTTATAAACA
GTTTCTTTAGAAAACTCTGCGAGCTGCACATGAGGCTGTAGGATCTGCAT
CCTTTTAGTACTGAGAATGGGCAAATCTACCACAAGCAGCAGGAAACATG
CAAGCAACACCTTCACCCCGGATGACTCCACTGCTAAATTCACTTTTAAG
AATATGCCATAATATTTCTGCAATTTCCTATAACTCCAAACACCTTACTC
TTAATTCCTTAGGATAACACGAAACATTTCACCCTATCTACATTCTTTTG
AACTGGTCTTATAAGACAGGATTCTCAGAGTAAAAAGCGGGGGGATGTTC
CACATTGGATGGAGATAGCAATTCATTTAAACAAATGAACAAATCAACAG
TGATCACCCCAAGCCCTCCTTTCCCTACTACTACTGAACTAAAGGAGCTT
AGAAATATGTATAACTTTCTAACATACTANATTTTCATTTTTTTTCCCAA
GCATGTTATGTTTGTTACATTATATTGAACACTGCCCCTGCACATTGGAT
ATCTAAGGATGTCTTCCCTAAAAAGTATTA
GTGCCCCAATGAATAGATAGGCCCGGNGGNCGCCTGTTTCAAAACAGGTA
GGNNGAACTANAGAAGTAACCAAAAAAGTCCAGANAGNAGGACTAATAAA
ATCAAATTCTTCTTTATGCTTTTAACCATTTGTTTTAATTGGACAACATG
CTCAAATTTCAGGATAATTGCATATTTAATTGCTTATTTAGTTCTTGAAA
ACAGACTTACCTGATATGATATTGTGAATTGTAAGTTCATATACAAGATA
CATATTTTGGTTTCTGCCTTGCATTTCTTAGAACTTCTAATACCTTTGTA
GACGGAGGTACTAGAAGAATCTCCATANTTTATACTTGGTCCTTGCCCTG
GTTCCTGGTATGTAACTCCTGACACCTCTGTGATTTCCCGAGTTATAGAA
GTGTAGAGCATTGAGCTCCCCCCTCTCCTGTCATTTCCTGGGTTATAGCA
GCATCTTTTGTTCTAACGAGGTGATTCATGGTGGGATCCTGACTGTGCTC
AAGATAATGTTTGGTTGCCAGGGGAACCAACTATGTGATTAGATGAATGT
AACTTTTATCTCTAACCACTCTGACCTCTGTGCGCAAGGCAGTTCCCTTG
AACATTGACCACTATGATCCCTGATGCTTAGTCTAATCCCTCAGCTCTTG
ATTACCATTATTTTCTCTTTGTCACAGGTTTTAGAAAACTCTCCCCATGT
CCCCAATTTCTGCATAGTTTTCCCTGCCCTGGCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_j07.b1 MSMg01no401_j07.b1 CHROMAT_FILE:
MSMg01no401_j07.b1 PHD_FILE: MSMg01no401_j07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:14 2005
         (293 letters)



>mm_chr9_27831948_27832640
          Length = 693

 Score =  466 bits (241), Expect = e-136
 Identities = 280/293 (95%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgctaaattcacttttaagaatatgccataatatttctgcaatttcctataactccaa 60
           ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 493 actgctaaattcactttcaagaatatgccataagatttctgcaatttcctataactccaa 434

                                                                       
Query: 61  acaccttactcttaattccttaggataacacgaaacatttcaccctatctacattctttt 120
           ||||||||||||||||||||| |||||| | ||||||||||||||||||| |||||||||
Sbjct: 433 acaccttactcttaattccttgggataatatgaaacatttcaccctatctgcattctttt 374

                                                                       
Query: 121 gaactggtcttataagacaggattctcagagtaaaaagcggggggatgttccacattgga 180
           ||||||||||||||||||||||||||||||| ||||||| || ||||| ||| |||||||
Sbjct: 373 gaactggtcttataagacaggattctcagaggaaaaagcaggaggatggtccccattgga 314

                                                                       
Query: 181 tggagatagcaattcatttaaacaaatgaacaaatcaacagtgatcaccccaagccctcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 313 tggagatagcaattcatttaaacaaatgaacaaatcaacagtgatcacctcaagccctcc 254

                                                                
Query: 241 tttccctactactactgaactaaaggagcttagaaatatgtataactttctaa 293
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 253 tttccctactactactgaactaaaggagcttagaaatatgtgtaactttctaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no401_j07.g1 MSMg01no401_j07.g1 CHROMAT_FILE:
MSMg01no401_j07.g1 PHD_FILE: MSMg01no401_j07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:14 2005
         (228 letters)



>mm_chr9_27621247_27621874
          Length = 628

 Score =  387 bits (200), Expect = e-112
 Identities = 221/228 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggactaataaaatcaaattcttctttatgcttttaaccatttgttttaattggacaacat 60
           ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 201 ggactaataaaatcaaattcttctttatgcttttaaggatttgttttaattggacaacat 260

                                                                       
Query: 61  gctcaaatttcaggataattgcatatttaattgcttatttagttcttgaaaacagactta 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctcaaatttcaggataagtgcatatttaattgcttatttagttcttgaaaacagactta 320

                                                                       
Query: 121 cctgatatgatattgtgaattgtaagttcatatacaagatacatattttggtttctgcct 180
           |||| |||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 321 cctggtatgatattgtgaattgtaagttcatatacaagatacatatactggtttctgcct 380

                                                           
Query: 181 tgcatttcttagaacttctaatacctttgtagacggaggtactagaag 228
           |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 tgcatttcttagaacttctaatacctttgtagacgggggtactagaag 428


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 628
Length adjustment: 9
Effective length of query: 219
Effective length of database: 619
Effective search space:   135561
Effective search space used:   135561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)