Query= MSMg01no401_j24.b1 MSMg01no401_j24.b1 CHROMAT_FILE:
MSMg01no401_j24.b1 PHD_FILE: MSMg01no401_j24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:18 2005
(637 letters)
>mm_chr9_15349704_15350736
Length = 1033
Score = 1139 bits (589), Expect = 0.0
Identities = 625/639 (97%), Gaps = 8/639 (1%)
Strand = Plus / Minus
Query: 1 taagttactgaagatacagatccaggtaaaaatattttctgtcacctcaataaactacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 taagttactgaagatacagatccaggtaaaaatattttctgtcacctcaataaactacag 774
Query: 61 ttcccagaaagtggctgaaactatcggga-acaggctcaaaacagaaccctgagttcccc 119
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 773 ttcccagaaagtggctgaaactatc-ggacacaggctcaaaacagaaccctgagttcccc 715
Query: 120 acaattgagaaatttttgtcacacactttgtcaaccctaagttgttgacaaagttgttag 179
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 714 acaattgagaaatttttgtcacacactttgtcaaccctaa----atgacaaagttgttag 659
Query: 180 taaatctctacacagggcgggaggttgcaccaacagtcacccaagtcagcgtctgcaggc 239
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 658 taaatctctacacagggcgggaggttgcaccagcagtcacccaagtcagcgtctgcaggc 599
Query: 240 atcagctggagtctgtccttctctccccaagagtctccacgtgcccggtaacacccgtgc 299
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 598 atcagctggagtctttccttctctccccaagagtctccacgtgcccagtaacacccgtgc 539
Query: 300 tgtcagcaagtcatgtgaccatcactgtttggaaaacccctctctccttgcaaacccctc 359
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 538 tgtcagcaagtcatgtgaccatcactatttggaaaacccctctctccttgcaaacccctc 479
Query: 360 tgtaatcagcaggacagaacagaggggagcccatggtcccatgttaccaggaacctgact 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tgtaatcagcaggacagaacagaggggagcccatggtcccatgttaccaggaacctgact 419
Query: 420 tcatggaggcagctccatcaggcaccaggaactgggaataagatgaggctccagcaattt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tcatggaggcagctccatcaggcaccaggaactgggaataagatgaggctccagcaattt 359
Query: 480 gcatataaaggccacctggaataacaaaagcctgcacccatcaactaagaacaaaatcta 539
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 358 gcatataaaggccacctggaatgacaaaagcctgcacccatcaactaagaacaaaatcta 299
Query: 540 gcctgaccttttcccatagggactgtggtgtttccatctgcaaatggagtgttc-agcag 598
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 298 gcctgaccttttcccatagggactgtggtgtttccatctgcaaatggagtg-tcaagcag 240
Query: 599 aaaaggctaaccagcaaggaagcctgtgtgctcatactc 637
|||||||||||||||||||||||||||||||||||||||
Sbjct: 239 aaaaggctaaccagcaaggaagcctgtgtgctcatactc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1033
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1023
Effective search space: 641421
Effective search space used: 641421
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no401_j24.g1 MSMg01no401_j24.g1 CHROMAT_FILE:
MSMg01no401_j24.g1 PHD_FILE: MSMg01no401_j24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:18 2005
(522 letters)
>mm_chr9_15305995_15306917
Length = 923
Score = 957 bits (495), Expect = 0.0
Identities = 516/523 (98%), Gaps = 1/523 (0%)
Strand = Plus / Plus
Query: 1 ggcctgcctgcctatcaagctcatgcgtctacgctcctaacagcagtccccaggctgacg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggcctgcctgcctatcaagctcatgcgtctacgctcctaacagcagtccccaggctgacg 260
Query: 61 tagctcttcactctccccagtcacatgtgttcgttgtgtttgcaccactctgtgtgtgtg 120
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 tagctcttcattctccccagtcacatgtgttcgttgtgtttgcaccacactgtgtgtgtg 320
Query: 121 catgtgcacacacgctgacaagttcatgcaaggcccctaatttgtttgctgatttttttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catgtgcacacacgctgacaagttcatgcaaggcccctaatttgtttgctgatttttttt 380
Query: 181 t-ctttccactggatatcagaggcctgcagggtgaatgtggagaaggtggtactcaaggc 239
| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 ttctttccactggatatcagaggcctgcagggtgaatgtggaaaaggtggtactcaaggc 440
Query: 240 ctttgttacaccatgtagctggtgtctacatagggaaatgacagccctgctgaaggccat 299
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgcgttacaccatgtagctggtgtctacatagggaaatgacagccctgctgaaggccat 500
Query: 300 gcttagtgtttgagcacgtggtctggggcctatgaggtcccagtgctccatgcacagatg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcttagtgtttgagcacgtggtctggggcctatgaggtcccagtgctccatgcacagatg 560
Query: 360 caggagtcctcgggagtaggcagagagtcagtcacagagactgtgacttgaggctggacg 419
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 561 caggagtcctcgggagtaggcagagagtcagtcacagagactgtgacttgagtctggacg 620
Query: 420 atgtgtgtgacagttagtgctacaaaaggagtaaggtgatgcatgcctttaagcccagca 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgtgtgtgacagttagtgctacaaaaggagtaaggtgatgcatgcctttaagcccagca 680
Query: 480 ctctggaggtagaggcaggcaagatttctgagttcaaggtcag 522
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctctggaggtagaggcaggcaagatttctgagttcaaggtcag 723
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 923
Length adjustment: 10
Effective length of query: 512
Effective length of database: 913
Effective search space: 467456
Effective search space used: 467456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
