BAC Information

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BAC

Clone NameMSMg01-401L08
Chromosome9 (Build37)
Map Location 40,857,341 - 41,014,687
singlet/doubletdoublet
Overlap gene2810457I06Rik, LOC628495
Upstream gene1700001J11Rik, Olfr982, Olfr983, Olfr984, Olfr985, 1700030E15Rik, LOC235279, Olfr986, Zfp202, Scn3b, Gramd1b, LOC270148, 9030425E11Rik, LOC100043076, LOC100043071, Hspa8, Bsx, 4931429I11Rik, Crtam
Downstream geneLOC100042464, EG667566, 6720432D03Rik, Sorl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401L08.T7 (MSMg01no401_l08.b1)MSMg01-401L08.TJ (MSMg01no401_l08.g1)
ACCAG501028AG501029
length756754
length of high quality
(start - end)
247 (76 - 322)254 (373 - 626)
definitionCHROMAT_FILE: MSMg01no401_l08.b1 PHD_FILE: MSMg01no401_l08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:24 2005CHROMAT_FILE: MSMg01no401_l08.g1 PHD_FILE: MSMg01no401_l08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,857,341 - 40,857,585)(41,014,434 - 41,014,687)
sequence
NNAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCAACAGGATCCG
CGGAATTCTATCCATAACCGGAGGGGGGGAAACCAAAGCAAAATATATTT
TTGAAAATCGTTTTAAAAGGCTACCATCCTGCATTGTGAAGTCCGTGTGA
AGTCAACTGCACCACTGTGGGGGTGGAGGTAAGGGATGGATGCTTCAGCT
GTTGTGCTGTGGAGGATTGCCTTAGCCTGTAAGCAAGCTTTCCCACAGCT
AGGGCGTGGATGAGGAACTGTGGCAGGAGAGAGTTATCTCTCAGTCTCTA
GAAAACTCTAGTAAGACCTCTTTTTTATTTCACGCGAGGGAAGTGGCTTT
TCCTGTCTGTAAGCCACTTATCGTGATCCCTACTCTCTCCGTTCCTTCCC
CTCCCCACCCAGAGAGTTGGCCAGGCATGGTGGTACATGCCTATAATCAC
ACTACTGGGGAGGTTGAGGCAGGAGGATGATCAGGAGCTTCCTGTTGTCC
TCAGTGATGTAGCAAGCTTCAAGCTAGCCTGGGCTATGAGGCTCTGTCTC
AAAAATATACAGGAAGAAGTGAAGCTCACTTGGAGTCTACACCATACAAG
CACGATGATGTGAGTTCAAAGCCCGGGATCACCTAAATAAAACTTAGGTG
TGGTAACATGCTTTTTGTGATCGATCCATGGATCTGGGAGCTTACACTGG
CGATTCTTTTCGGGCTTTAACGCTCATTCCTCTTTTCCGTACTCTTTACT
AACTTT
NCCCGAATATAGTGGGAGGTGTGGNGGNCGCCTGTTTCAAACAXXXXXXX
XXXXXXXXXXXXXXTACCAAAACAATTCCCTTGAATCGCATCTCTGGAGT
TCTCCTTTTCTCAGTTGCTCCTCCCACCCCCTACTGTACATCCCTAATAC
AGTCATTCTCTCCCTCTGCTCTCTCCAATGTCTACCTTGAGTAGCTCTCT
CCCTCTTTGTCCTCGGCAATTAGACGCGGGGGCGGCAGTAATGACGTTCT
ACTATGTCTTATGACACGGGTCTTTCTCCCATTTCATTGACTCCCAAATT
TGCTCATCTATTGAAATCATTGGTAGCTCTGGTGTGGAGAAACTTAACTA
TAATCCCAGGACTTGGGATGCTGGGGCTGAAGGATCAAGTTTAAGGCCAG
AGTGGACTAACATTGTGACACACAGTTTCATAAAGAGCAGAGCAGGGTTA
AAAGGCTGAAAATAAAAAACAAACCAAGGATTAAGTCAACGCTGGGAAAT
CGCTCCTCTGCCCATGCTACCCAGCATTCATGCAAATCATCTTCCACCCA
TCTTCCACGCTTGGGACAGCCCCGCCTAAATAGACGGGCATCTCCATTTC
TTCCTCCTGTACATAAAGTGAGTTATTAGCCTGTAACCTAAACTCACTTC
AGCTCAAACACTGTTCAAATTCTTCCAACATTGACATCATATAGAAACAC
AGCTTCTCCTCTGAAAGCCCAGAACTCCTTTACGGGAGGTCGAGTTGCTG
GGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_l08.b1 MSMg01no401_l08.b1 CHROMAT_FILE:
MSMg01no401_l08.b1 PHD_FILE: MSMg01no401_l08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:24 2005
         (247 letters)



>mm_chr9_40857141_40857787
          Length = 647

 Score =  474 bits (245), Expect = e-138
 Identities = 245/245 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggggaaaccaaagcaaaatatatttttgaaaatcgttttaaaaggctaccatcctgcatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggggaaaccaaagcaaaatatatttttgaaaatcgttttaaaaggctaccatcctgcatt 260

                                                                       
Query: 61  gtgaagtccgtgtgaagtcaactgcaccactgtgggggtggaggtaagggatggatgctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgaagtccgtgtgaagtcaactgcaccactgtgggggtggaggtaagggatggatgctt 320

                                                                       
Query: 121 cagctgttgtgctgtggaggattgccttagcctgtaagcaagctttcccacagctagggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagctgttgtgctgtggaggattgccttagcctgtaagcaagctttcccacagctagggc 380

                                                                       
Query: 181 gtggatgaggaactgtggcaggagagagttatctctcagtctctagaaaactctagtaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtggatgaggaactgtggcaggagagagttatctctcagtctctagaaaactctagtaag 440

                
Query: 241 acctc 245
           |||||
Sbjct: 441 acctc 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no401_l08.g1 MSMg01no401_l08.g1 CHROMAT_FILE:
MSMg01no401_l08.g1 PHD_FILE: MSMg01no401_l08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:24 2005
         (254 letters)



>mm_chr9_41014234_41014887
          Length = 654

 Score =  491 bits (254), Expect = e-143
 Identities = 254/254 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggggctgaaggatcaagtttaaggccagagtggactaacattgtgacacacagtttcata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ggggctgaaggatcaagtttaaggccagagtggactaacattgtgacacacagtttcata 395

                                                                       
Query: 61  aagagcagagcagggttaaaaggctgaaaataaaaaacaaaccaaggattaagtcaacgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 aagagcagagcagggttaaaaggctgaaaataaaaaacaaaccaaggattaagtcaacgc 335

                                                                       
Query: 121 tgggaaatcgctcctctgcccatgctacccagcattcatgcaaatcatcttccacccatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgggaaatcgctcctctgcccatgctacccagcattcatgcaaatcatcttccacccatc 275

                                                                       
Query: 181 ttccacgcttgggacagccccgcctaaatagacgggcatctccatttcttcctcctgtac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ttccacgcttgggacagccccgcctaaatagacgggcatctccatttcttcctcctgtac 215

                         
Query: 241 ataaagtgagttat 254
           ||||||||||||||
Sbjct: 214 ataaagtgagttat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 654
Length adjustment: 9
Effective length of query: 245
Effective length of database: 645
Effective search space:   158025
Effective search space used:   158025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)