BAC Information

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BAC

Clone NameMSMg01-401M16
Chromosome9 (Build37)
Map Location 110,453,046 - 110,453,311
singlet/doubletsinglet
Overlap geneSetd2
Upstream geneFbxw15, EG382106, E330001B16Rik, C85627, EG382109, 1700124P09Rik, Spink8, 3000002C10Rik, Nme6, Camp, Cdc25a, LOC100043782, Mtap4, LOC100049540, Dhx30, Smarcc1, Rn4.5s-ps2, Cspg5, Tmem103, Scap, Ptpn23, Ngp, Klhl18, Kif9
Downstream geneNradd, Nbeal2, Ccdc12, Pthr1, Myl3, 9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik, Tessp3, BC107230, 1700112C13Rik, Tsp50, Tmie, Als2cl, Gm590, Tdgf1, Lrrc2, Rtp3, ENSMUSG00000057802, Ltf, Ccrl2, LOC100039275, Lrrfip2, Mlh1, Epm2aip1, Lba1, Dclk3, LOC620615
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401M16.T7 (MSMg01no401_m16.b1)MSMg01-401M16.TJ (MSMg01no401_m16.g1)
ACCAG501092AG501093
length757760
length of high quality
(start - end)
244 (79 - 322)266 (329 - 594)
definitionCHROMAT_FILE: MSMg01no401_m16.b1 PHD_FILE: MSMg01no401_m16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:30 2005CHROMAT_FILE: MSMg01no401_m16.g1 PHD_FILE: MSMg01no401_m16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGATAAATGCGC
GGAATTCCAAAGAGTGCCAGACACATGGGTCAGGGCTAAGAGCACGGGCT
GCTCTCTTGCACAGGACCCTAGTCTGATTCCCAACACTGCATAGTGGCTC
ACACGTGTTATCAAAATCTGGTGCCCTCTTCTGGCCTTGAATACTGCACT
AGTGCACATAGATATACATGCATGTAGTTACATATACATACCTGCAGGCA
AAATGCTCATACACATAAAATAAAAATAAATCTTAATAAAGAAAAAAGTA
TTAAAAACGGGGCTGGAGGTGCAGTTCATTGGAGATTGCTTACCTAGTAG
GGCAGTGTGGTGCTCCATCCCCAGACACACACACACACACACACACACAC
ACACTCACACCCCCCCCCCAATAGAAGATATGTCAAATTCAAGGGCTAAC
AAATACATCCGTACTTAGGAGTATTATGGAGCCATAGGTAACCGTTTCTA
TCTATCCATAGTCATGATATGCTACATAAAAACATTTATCAAACAACAGG
TTCTGCACGAGTGTGTTTATCAGCCCTGCGCTGGGAAAAGCCTATGGCTG
CCTGTGAAAGGCTTGCTGGATCAAATTCTCATCCCCTTTTTATCCATAAC
CCTTGCTCATCTGTCTCTTTATTCTGAACCTTTCAAATTTCCTATAACTG
CATATAAACTCAAGCTTATTTTTCACTTACGTTTTTCTTTTAACTCTTCA
CTCCTTT
NNCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTACTTTGCCCATGGAAGAGACAAGT
CCCTGTTCTTCTCGGAGCAGTCCGAGCTACAAACATTATTCAGACCGCTG
GGAAGATGGATTAGAGACCAGGAGACATGCATATGAGGAAGAGTATGAGA
GTAAAGGCTGTTCTCAAACTGAAAAATACTTCCTTCATAAAGGAACAGAG
AGAAGTGCAGAAAGTTGTTATTCACAGTTTGGCAGGAAAGCAGATAATCA
CCTGCCTGACATTGCTCAGAGTGTTGTTGTTGATAGTACAAGTCAGACAG
ACTCGAGATCTGACCATCTAGGCCACCTGAATCCAGGGGACACATTAAGA
GCCAAAACATCTAGGCCACAAGAGCTACCAGTTTATTCTGACGATTTTGA
AGATCTCCCAAATAAGTCTCGGCAGCAGATGATTTTCTCTAATCGGCCAG
ATAGTAGTAGACTAGGAAAAACAGAGCTGAGTTTTTCTTCCTCTTGTGAC
ATTTCCCGAATGGATGGCTTGCACTCATCAGAAGAGCTCAGAAACCTANG
GTGGGACTTTTCCCAACAGGAAAGGCCCACCCCACATACCAGCAGTCTGA
CAGCAGCTATGGAACTTGTGGTACCCATAAGTATCACCAAAGTACTGACC
CCTATGTGGGGACCCCTAATTACTGCGAAGGCAATGGCTATTTGGGACCC
AGATCACCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_m16.g1 MSMg01no401_m16.g1 CHROMAT_FILE:
MSMg01no401_m16.g1 PHD_FILE: MSMg01no401_m16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:30 2005
         (266 letters)



>mm_chr9_110452846_110453511
          Length = 666

 Score =  499 bits (258), Expect = e-146
 Identities = 264/266 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttgatagtacaagtcagacagactcgagatctgaccatctaggccacctgaatccaggg 60
           |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct: 201 gttgatagtacaagtcagacagactcgagatctgaccatctaggtcacctgaatccagag 260

                                                                       
Query: 61  gacacattaagagccaaaacatctaggccacaagagctaccagtttattctgacgatttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacacattaagagccaaaacatctaggccacaagagctaccagtttattctgacgatttt 320

                                                                       
Query: 121 gaagatctcccaaataagtctcggcagcagatgattttctctaatcggccagatagtagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagatctcccaaataagtctcggcagcagatgattttctctaatcggccagatagtagt 380

                                                                       
Query: 181 agactaggaaaaacagagctgagtttttcttcctcttgtgacatttcccgaatggatggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agactaggaaaaacagagctgagtttttcttcctcttgtgacatttcccgaatggatggc 440

                                     
Query: 241 ttgcactcatcagaagagctcagaaa 266
           ||||||||||||||||||||||||||
Sbjct: 441 ttgcactcatcagaagagctcagaaa 466


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 666
Length adjustment: 9
Effective length of query: 257
Effective length of database: 657
Effective search space:   168849
Effective search space used:   168849
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)