Query= MSMg01no401_n08.b1 MSMg01no401_n08.b1 CHROMAT_FILE:
MSMg01no401_n08.b1 PHD_FILE: MSMg01no401_n08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:33 2005
(554 letters)
>mm_chr9_28660224_28661178
Length = 955
Score = 998 bits (516), Expect = 0.0
Identities = 545/560 (97%), Gaps = 11/560 (1%)
Strand = Plus / Minus
Query: 1 gatcagagaggaggaacttttgtctctgagagcctgagctgattatcaacaggagaggag 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 886 gatcagagaggaggaacttttgtctctgagagcctgagctgaatatcaacaggagaggag 827
Query: 61 gtcacggaggtgagaaggctaggtgccccatgatgttacaggccatagaacggtctttga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 gtcacggaggtgagaaggctaggtgccccatgatgttacaggccatagaacggtctttga 767
Query: 121 cttttactctgtcgctcgctgtaataactgtcaaaggtgcggtagaataaggtgctgtta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 766 cttttactctgtcgctcgctgtaataactgtcaaaggtgcggtagaataaggtgctgcta 707
Query: 181 cacccagtaggaggcaacatagtctgtactttcccttaacttttttcaaacactgcatg- 239
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 706 cacccagtaggaggcaacacagtctgtactttcccttaacttttttcaaacactgcatgg 647
Query: 240 --gtt---tttttaataacttttgcatccagttgtcaggaaccaatttctctaccaactt 294
||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 cagttcaat-----ataacttttgcatccagttgtcaggaaccaatttctctaccaactt 592
Query: 295 tactgtatagcaaggaggttttaacctttaatagcaatacattaaaggagggagacttcg 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 tactgtatagcaaggaggttttaacctttaatagcaatacattaaaggagggagacttcg 532
Query: 355 tgacttccaggaatagcaggcacgtgtctaaatattatacctacttctatagatttttag 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 tgacttccaggaatagcaggcacgtgtctaaatattatacctacttctatagatttttag 472
Query: 415 cactttaccctaaataaggtggtaaaagagaaatcattttatttcaacaattccagttta 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 cactttaccctaaataaggtggtaaaagagaaatcattttatttcaacaattccagttta 412
Query: 475 aatcaaaagaatactgttgcctgtaatggctaagcaatatcttaaagtgagtttctactg 534
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 411 aatcaaaagaatactgttgcctgtaatggttaagcaatatcttaaagtgagtttctactg 352
Query: 535 attattggttcaaagaggaa 554
||||||||||||||||||||
Sbjct: 351 attattggttcaaagaggaa 332
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 955
Length adjustment: 10
Effective length of query: 544
Effective length of database: 945
Effective search space: 514080
Effective search space used: 514080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no401_n08.g1 MSMg01no401_n08.g1 CHROMAT_FILE:
MSMg01no401_n08.g1 PHD_FILE: MSMg01no401_n08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:33 2005
(274 letters)
>mm_chr9_28484763_28485436
Length = 674
Score = 514 bits (266), Expect = e-150
Identities = 272/274 (99%)
Strand = Plus / Plus
Query: 1 tggaacgtttcattaatcaagagcccaggagcatgagcttggcaagggcatccctcctgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggaacgtttcattaatcaagagcccaggagcatgagcttggcaagggcatccctcctgg 260
Query: 61 tcctggtgagtgttgcagaatcctcagggggcagacgcagtcaccctcttgctcttccta 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 tcctggtgagtgttgcagaatcctcagggggcagatgcagtcaccctcttgctcttccta 320
Query: 121 ctcagtgagaaagaagccaaggtctgttctcttcccagcagctatcgacttttgtccagt 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 ctcagtgagaaagaagccaaggtctgttctcttcccagcagctatcggcttttgtccagt 380
Query: 181 ctatagattaatttttcagacttggtgttagttcaggttagataaagataatgaaagttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctatagattaatttttcagacttggtgttagttcaggttagataaagataatgaaagttt 440
Query: 241 cctaatcctcttaaagaagatttatctgactgag 274
||||||||||||||||||||||||||||||||||
Sbjct: 441 cctaatcctcttaaagaagatttatctgactgag 474
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space: 176225
Effective search space used: 176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
