BAC Information

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BAC

Clone NameMSMg01-401P17
Chromosome9 (Build37)
Map Location 8,976,057 - 8,976,354
singlet/doubletsinglet
Overlap genenone
Upstream geneYap1, EG665090, 9230110C19Rik, AK129341, LOC100039855, 1700018P22Rik, LOC665108, 1700128F08Rik, Trpc6, Pgr
Downstream gene9030420J04Rik, Cntn5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401P17.T7 (MSMg01no401_p17.b1)MSMg01-401P17.TJ (MSMg01no401_p17.g1)
ACCAG501238AG501239
length759762
length of high quality
(start - end)
528 (75 - 602)299 (327 - 625)
definitionCHROMAT_FILE: MSMg01no401_p17.b1 PHD_FILE: MSMg01no401_p17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:44 2005CHROMAT_FILE: MSMg01no401_p17.g1 PHD_FILE: MSMg01no401_p17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATATTTGCGGCGCTAATGGACTCACAATTTCAGAACAGCGCGGAATT
CAGGNCTTTTCCTAAAATAGTANAAGCAATATACAGGAACCCAGTAGCCA
ATATCAAGCAAAATGGAGAGAATCTTGAATCAATCTCACTAAAATAAGGA
ACTAGACAAGTATGCCTACTTTCTCCCTACCTATTCAATATAGTGCTTGA
AGTTCTAGCCAGAGCAATTAGACAACATAATGAAATCAAAGGGATATTTT
ATGGAAAGGAAGAAGTCAAAAAGAATCACTATTTGCAAATGATATGATAG
TATACTTAAGTGACTCCATAATTCCATGAGAGAATTCCTAAACCTGATAG
ACAACTTCAGCAAAGTAGCTGAATATAAAATTAACTCAAACAAATCATTG
GCCCTCCTTTACACAAAGGATAAACAGGCCGAGAAAGAAATTAGGGAAAC
AACACCATTCACTATATTCACAAGCAATATAAAATACCTTGGTGTAACTC
TAAGCAAGTGAAAGATCTGTATGATAAGAACTTCAAGTCTTTGAAGAAGG
AAATCATAGAAAGTCTCAGAAGATGGAAAGATCTACAATGCTCATGGATT
GGCAGGATTATTATAATAAAAATGGCCAACTTGCTGATAGCAACCTACTG
ATTCTTGTTTTACCCATCAAAATTCCAATTCAGGTCTTCCAGAGCTAAAA
AGACCAATTCGACATTTCTTCTGGAATAACCCACTATGAAATGTGAAACC
TATTCTCTN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAAACTGCTCACACAAAGTGGGCTTCT
GCACGTTATAAAATAACCCTGCTAGGATTAGATTATGTATAAGATGAGAT
TTCACCACTTCTGATCAAATGAAATAACATCATGTCATGTACATTGTTTT
AAAATGTCGATATTTTGATCTTATGCATCAGTAGTACAGAGAGCAATGCA
AACTCTCTAGCTAAGCGGCTCCAGAGGGCAGCATTTCTGACAGCTGTACT
AAAACTGTGCGTACACATTCTTTGGTATTTACTGCAGTTTTTCCTTTTCT
TTTTCTCCTTTTCTTTTTCTTTTCTTTTCTTTTTTTTTAAATTTGAGGCT
AAGTATTATTGTGAAGATCAGGGTAGCCTAGGGTTTATGACATAGCCTCA
GCTGGCCTCAGTGTTGGGAGTGCCAGCATGCATCAGCAACACATTTGCCT
CTTATAGATTAGTTAACTTAAAACAAAAACACACTATTCATAGTTGTAAT
CAGGTATTTACAAAATACATGGCATATGATTTCATAGGTAAATAGGAAAT
TTCTCAACATTATTGAAACATTTAACTGGTGGCATGATTTAATGTGAAAA
CATAACTCTATGTCTGAAATAAATGTTTTATGGTGTCAGAACATTCTTGT
GTATCAAATAACTAAATAGAACATGTTACTTTTCTTCAACTTCTTATTTG
ATGAACACTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_p17.g1 MSMg01no401_p17.g1 CHROMAT_FILE:
MSMg01no401_p17.g1 PHD_FILE: MSMg01no401_p17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:44 2005
         (299 letters)



>mm_chr9_8975795_8976493
          Length = 699

 Score =  540 bits (279), Expect = e-158
 Identities = 294/299 (98%), Gaps = 1/299 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttactgcagtttttccttttctttttctccttttctttttcttttcttttcttttttt 60
           ||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||
Sbjct: 560 atttactgcagtttttccttttctttttctctttttctctttcttttcttttc-tttttt 502

                                                                       
Query: 61  ttaaatttgaggctaagtattattgtgaagatcagggtagcctagggtttatgacatagc 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaaatttgaggctaggtattattgtgaagatcagggtagcctagggtttatgacatagc 442

                                                                       
Query: 121 ctcagctggcctcagtgttgggagtgccagcatgcatcagcaacacatttgcctcttata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcagctggcctcagtgttgggagtgccagcatgcatcagcaacacatttgcctcttata 382

                                                                       
Query: 181 gattagttaacttaaaacaaaaacacactattcatagttgtaatcaggtatttacaaaat 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 gattagttaacttaaaacaaaaacacactatttatagttgtaatcaggtatttacaaaat 322

                                                                      
Query: 241 acatggcatatgatttcataggtaaataggaaatttctcaacattattgaaacatttaa 299
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acatggcatatgatttcataggtaaataggaaatttctcaacattattgaaacatttaa 263


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 699
Length adjustment: 9
Effective length of query: 290
Effective length of database: 690
Effective search space:   200100
Effective search space used:   200100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)