BAC Information

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BAC

Clone NameMSMg01-402D10
Chromosome9 (Build37)
Map Location 61,318,471 - 61,318,714
singlet/doubletsinglet
Overlap genenone
Upstream geneThsd4, LOC100039792, EG384942, Lrrc49, Larp6, LOC100040447, Uaca, ENSMUSG00000052143, A430102L10, LOC100040481, Tle3
Downstream geneLOC100039851, Rplp1, Kif23, Paqr5, Glce, Spesp1, LOC100039897, Anp32a, Coro2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402D10.T7 (MSMg01no402_d10.b1)MSMg01-402D10.TJ (MSMg01no402_d10.g1)
ACCAG501414AG501415
length774824
length of high quality
(start - end)
244 (74 - 317)125 (73 - 197)
definitionCHROMAT_FILE: MSMg01no402_d10.b1 PHD_FILE: MSMg01no402_d10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:02 2005CHROMAT_FILE: MSMg01no402_d10.g1 PHD_FILE: MSMg01no402_d10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAATCTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACCCCACTCCCCTAACATGCACAGAGAGAGTTTGGTGCAAGGCCTAA
GAAGCTTGCTTGCAGGCCCCCCTGGGTGGTCAGCTAGGATGGGGGATGGG
CTCTTCTCAACAATGCTGATTATCCAATAGGCTGGGTGAGTTAGGCCCGA
GGTTCAGCAAGTATTTTAATTCCTTTTAAAATCAAGAGGGGAAAAAATGA
ATATGATCCACCTTGATGTCTACGCATCAACATGCCAAGGCAGCTCTAAA
TCAAAGTGATGAAACCTGTTTGCTGGGCGTGGCTCATTCTGAGGCCCGCC
CAGCAGGCATGAGGACCTGAGTTCAGACCCCAGCACCTGTGTAAAAGCCA
GGCGTCGGGGTTCCCAATCCCAGGGTTTGAGAGGTCAAGACAGGAAGAAC
CGTGAAGCTCAGTGGTCAGCCAGCTCAGTCGAGTCAGTGGGCTATAGGTT
CAGCAAGAAACCCTGCATTAAAAAGCAAGAGGACCGTCCATAATGAATAA
TCCCCTAAGCCTGCCTGGAACTCCTCTGACAGAAGAAATTTGGACAAGTC
TAATCATTTGCTGTGTCTTGTGACACAAAAAAAACTTGTCCCAAACCTCT
AAACCATATTTCTGAGCACTTGGATATACCTTAAGCAATCTCTGGCCTTC
AAGTTATCCCTGGTATGTAAACTTTAAAAATAAACCCTGTAAATAAATTT
AATCCCTCATCTCCACGGGTTAAN
CCATGCTCTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATCTTGGGTTTGTTGTTCATGGAAAATGT
GACATCAAAATGTTATAGGAGAAATACGATAAGATTAGCTCTTTTAATAT
TATATGTTACATTTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATC
TGCCTTGTTCTCATGCCTGCGTGTATATGCACACATTTCTTGTCTTTCTC
GCAACGTTTACTATTACTTGCTCATGTGTTTTCTCTTCTTCCTCCTTCTA
TTTTCTCCTCCTATTCTTTTTATCCATTTTATTTTTACCCACTGATCCAC
TTTATTTTACCTCCCTAACCACTGATTCTTGCGCTTACTCCCCCCCCCTT
CCCTTCCTTCTTTTTTTCTTCCCTTCTTTCCCCTCCCTTTTTTCCCCCTC
TTCCTTTTTCTTTTTCTTCTCCCTCTTCCTCTCTTTTCCTTTTCTCCCCT
CTTTTTTTCCCCTCCCCTCTCCTTTTTCCTTCTCTCTTCTTTCTCCCCCT
CTCTTTCTTTTTTTTTCTTTTTTTCCTCCTCCCTTCTTTCCTTCACTCCC
TTCCCCCCCTTTTCTTCCTCCCCTTTTTTCCTTCTTCTTTTTTCTTCCCT
TTCTTCTAACCCCTCTTTTTTTTTTCCTCCCCTTTTTTCTTCTCGTCTTT
TTTTTCCCCCCCCCCCCATTTTTCCCTCCCCCCATCCCTCTCCTTTTCTT
TTATTTCATTCCTCTTACTCTTTTTCTCCTCTGTTTCCATATCCCTCTCT
TCCCCCTCTTCACCTCCTTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_d10.b1 MSMg01no402_d10.b1 CHROMAT_FILE:
MSMg01no402_d10.b1 PHD_FILE: MSMg01no402_d10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:02 2005
         (244 letters)



>mm_chr9_61318271_61318914
          Length = 644

 Score =  449 bits (232), Expect = e-131
 Identities = 241/244 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagagagagtttggtgcaaggcctaagaagcttgcttgcaggcccccctgggtggtcag 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 444 acagagagagtttggtgcaaggcctaaggagcttgcttgcaggcccccctgggtggtcag 385

                                                                       
Query: 61  ctaggatgggggatgggctcttctcaacaatgctgattatccaataggctgggtgagtta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctaggatgggggatgggctcttctcaacaatgctgattatccaataggctgggtgagtta 325

                                                                       
Query: 121 ggcccgaggttcagcaagtattttaattccttttaaaatcaagaggggaaaaaatgaata 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 324 ggcccgaggttcagcaagtattttaattccttttaaaatcaagagggggaaaaatgaata 265

                                                                       
Query: 181 tgatccaccttgatgtctacgcatcaacatgccaaggcagctctaaatcaaagtgatgaa 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgatccaccctgatgtctacgcatcaacatgccaaggcagctctaaatcaaagtgatgaa 205

               
Query: 241 acct 244
           ||||
Sbjct: 204 acct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)