BAC Information

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BAC

Clone NameMSMg01-402N07
Chromosome9 (Build37)
Map Location 38,305,141 - 38,305,384
singlet/doubletsinglet
Overlap genenone
Upstream geneBC024479, Esam1, Vsig2, Nrgn, Spa17, Siae, Tbrg1, Panx3, LOC666881, EG627798, Olfr160, Olfr151, Olfr874, Olfr875, Olfr876, Olfr877, Olfr145, EG627852, Olfr878, GA_x5J8B7W60AJ-1667802-1666911, Olfr880-ps1, Olfr881, Olfr882-ps1, Olfr883, Olfr884, Olfr1550-ps1, Olfr885, Olfr886-ps1, Olfr887, Olfr888, Olfr889, Olfr890, Olfr891, Olfr892-ps1, Olfr893, Olfr894, Olfr143, Olfr895, Olfr896-ps1, Olfr897-ps1, Olfr25, Olfr898, Olfr899, Olfr900, Olfr147, Olfr901, Olfr902, Olfr903-ps1, Olfr904, Olfr905, Olfr906
Downstream geneOlfr907, Olfr908, Olfr909, Olfr910, Olfr912, Olfr913, Olfr914, Olfr915, Olfr916, Olfr917, Olfr918, GA_x5J8B7W60AJ-925630-926226, Olfr919, Loh11cr2a, Olfr920, Olfr921, Olfr922, Olfr923, Olfr924, Olfr26, Olfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934, Olfr935, Olfr146, EG628171, Olfr937, LOC667260, Olfr938, Olfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1, Olfr27, Olfr942-ps1, Olfr943, Olfr944, Olfr144, Olfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1, Olfr948, LOC667312, Olfr949-ps1, Olfr950-ps1, Olfr951, Olfr952, Olfr953-ps1, Olfr954, Olfr955, Olfr956-ps1, Olfr44
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402N07.T7 (MSMg01no402_n07.b1)MSMg01-402N07.TJ (MSMg01no402_n07.g1)
ACCAG501885AG501886
length770717
length of high quality
(start - end)		244 (72 - 315)491 (83 - 573)
definitionCHROMAT_FILE: MSMg01no402_n07.b1 PHD_FILE: MSMg01no402_n07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:52 2005CHROMAT_FILE: MSMg01no402_n07.g1 PHD_FILE: MSMg01no402_n07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GATTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTGCAACTGACTTCAAAAAGCTGTATCCTAGCAACAGTACTTG
ACCTGAAGCTCCTGAAGGTTCTTTTTGGATGTCCCTGGTTAGTATGGCCC
CTACTTACTTGACAAAGACGCCCAACTGAAGATTACTCCTTGCAAGGTGG
ATCACAATAACTGTATGCCAAACTGTATACTTTTCAGTTTGTCCTGATCT
CTATTTTGTTATGAATTACATGCTGGGAAAAATACATGGTAAAAAAGACT
GCACAAACACAAATCGCCTCTTTTTTACACACACACACACACACACACAC
TCACAAACTAACTCATACTCACTCTTGCTCAGTGAGAGAATATTATAGAC
CGACACATATACCGAGATAAAGGTTCATAGACAGATTACTTCATTGAGAT
TGATATACAGATAGACTAAATTGCAGGCAACGGTTCAGAGTCTTATATTT
GCTTATTATCATGCCCACACTTATTGATACTTTCCCAGTTTTATTTTTTT
AAAGCTTTTTTATATGCCGGTTATTTTCCCCTCAACACTTTATGTGAAAA
GATTTCCTTCCACCTTTATTATCCCAGTTTCAAGCCCTGCCCACCTTTTT
TGATTTTATCCATATTTTTTATTTTTCTGTTCTTCTCTTTTTTCCCCAAA
TTTTGTATCCTCTCCTAAAATTTGGACTTTGACTTCCCATTATACCCTCC
CCCCTATTTTTATCTTTTTT

NCTTTCTCTATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTAGGACTGGATTCC
TAGATATTGTTTAAATCTGGCTTTGCTCTGGAATATTTTGGTTTCTCCAT
CTAAGATTATCGAGAGTTTTGCTTTGTACAGTAGCCTGGGCTGGCATTTG
TGTTCTCTTTGGGTCTGCATGACATCTGTACAGTATGTTCTGGCTTTTTA
TATTTTCTTTTGAGAAGTCTGGTGTAATTCTGATAGATCATATTACTTGA
CCATTTTACCTTATAGCTTTTAATATTATTTTTTGTTCTTTACATTTAGT
GCTTTGATTATTTCATGACAGGAGGATTTTCTTGATGCAAAATATTTAAT
GTTCTGTAGGCTTCTTGTACTTTTATAGACATCTCTTTCTTCAGGTTATG
GAAGTTTTCTTCTATAATTTTGTTGAAGGTGTTTTCTTGCCCTTTGAGCT
GGGAATTTTCACTTTCTTATACTCCTATTATTCTTAGGTTTGGTCTTCTC
ATTGTGTTATGGTGTTCCCGGATGCTTTGGGTTATGACTTTATTATGCCT
TTTGTACTTTTTTATTTTTTTGACCCTTGTGCCCATATTTTCTATGGTAT
CTTCCATGCCTGAGAATCTCTCTTCTATTTCTCGTATTCTGTAAGCCCCG
ACCTGTTTCTCGAGGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_n07.b1 MSMg01no402_n07.b1 CHROMAT_FILE:
MSMg01no402_n07.b1 PHD_FILE: MSMg01no402_n07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:52 2005
         (244 letters)



>mm_chr9_38304941_38305584
          Length = 644

 Score =  433 bits (224), Expect = e-126
 Identities = 239/244 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaaagctgtatcctagcaacagtacttgacctgaagctcctgaaggttctttttggatg 60
           ||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 201 aaaaagctggatcctagcaacagtacctgacctgaagctcctgaaggtcctttttggatg 260

                                                                       
Query: 61  tccctggttagtatggcccctacttacttgacaaagacgcccaactgaagattactcctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccctggttagtatggcccctacttacttgacaaagacgcccaactgaagattactcctt 320

                                                                       
Query: 121 gcaaggtggatcacaataactgtatgccaaactgtatacttttcagtttgtcctgatctc 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 gcaaggtggatcacaataactgtatggcaaactgtatacttttcagtttgtcctgatctc 380

                                                                       
Query: 181 tattttgttatgaattacatgctgggaaaaatacatggtaaaaaagactgcacaaacaca 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 tattttgttatgaattacatgctgggaaaaatacatgggaaaaaagactgcacaaacaca 440

               
Query: 241 aatc 244
           ||||
Sbjct: 441 aatc 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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