Query= MSMg01no403_c05.b1 MSMg01no403_c05.b1 CHROMAT_FILE:
MSMg01no403_c05.b1 PHD_FILE: MSMg01no403_c05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:19 2005
(535 letters)
>mm_chr9_117900001_117900935
Length = 935
Score = 955 bits (494), Expect = 0.0
Identities = 523/534 (97%), Gaps = 3/534 (0%)
Strand = Plus / Plus
Query: 5 gaattcttacttgttacattactatggactcaaaagttatatttacaggcagggaaatca 64
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gaattcttacttgatatattactatggactcaaaagttatatttacaggcagggaaatca 261
Query: 65 gaagaaaacgatgagtcattgagctgacttctgaagagatttcaag---ctcactaccac 121
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 262 gaagaaaacgatgagtcattgagctgacttctgaagagatttcaagaagctcactaccac 321
Query: 122 aagaaaagaaagaacagttagttttgttcccacacttaggagatccaatgcatgtttcaa 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aagaaaagaaagaacagttagttttgttcccacacttaggagatccaatgcatgtttcaa 381
Query: 182 ggttctataaactctctcacacacacatacaccacaaataaaaataattttaaaatgatc 241
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ggttctatgaactctctcacacacacatacaccacaaataaaaataattttaaaatgatc 441
Query: 242 ttttaaacaattccaggggaatactattccctcttctggccttttgggtactggagtcat 301
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 442 ttttaaacaattccaggggaatactattccctcttttggccttttgggtactggagtcat 501
Query: 302 tagcacatacccacacataggcacacacacatatgcataatctaaaattatgtgtattaa 361
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ttgcacatacccacacataggcacacacacatatgcataatctaaaattatgtgtattaa 561
Query: 362 ataagtctttagaatgattctttaaagggtacaaatgaaaggcagagaactggaaagtgc 421
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 562 ataagtctttagaatgattctttaaagggtacaaatgaaaggcagagaactggaaaatgc 621
Query: 422 tcatgaacaatagtcatgactactgtcttctgatcttcctttcaggttgtttatagttag 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tcatgaacaatagtcatgactactgtcttctgatcttcctttcaggttgtttatagttag 681
Query: 482 tgaatagcaatgcaactggcatctggatgttgactgtttcctgcactttgctta 535
||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 682 tgaatagcaatgcaactggcatctggatgttgattgtttcctgcgctttgctta 735
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space: 485625
Effective search space used: 485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no403_c05.g1 MSMg01no403_c05.g1 CHROMAT_FILE:
MSMg01no403_c05.g1 PHD_FILE: MSMg01no403_c05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:19 2005
(240 letters)
>mm_chr9_118060847_118061486
Length = 640
Score = 261 bits (135), Expect = 2e-74
Identities = 147/151 (97%)
Strand = Plus / Minus
Query: 90 acctcgctgggagggttaaacaagttcataggcagctttgctcccttatcactctcatcc 149
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 440 acctcgctgggagggttaaacaagttcataggcagctttgttcccttatcactctcatcc 381
Query: 150 cagaactaaagtctaggagaacgaattaaggagcttgaacaggtgccctggatatggtcc 209
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 380 caggactaaagtctaggagaatgaattaaggagcttgaacaggtgccctggatatggtcc 321
Query: 210 catctccaatgggtagccccttatttaagcc 240
| |||||||||||||||||||||||||||||
Sbjct: 320 cgtctccaatgggtagccccttatttaagcc 290
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space: 145761
Effective search space used: 145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
