BAC Information

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BAC

Clone NameMSMg01-403D13
Chromosome9 (Build37)
Map Location 118,978,043 - 119,159,336
singlet/doubletdoublet
Overlap geneVill, Plcd1, Dlec1, Acaa1b, EG546165, Slc22a14, Slc22a13, 9330176C04Rik, Oxsr1
Upstream gene2010110K16Rik, Eomes, Golga4, Itga9, LOC100039768, Ctdspl
Downstream geneMyd88, Acaa1a, Xylb, Acvr2b, Endogl1, Scn5a, Scn10a, Scn11a, LOC100039837, Wdr48, Gorasp1, Ttc21a, Axud1, Cmya1, Cx3cr1, Ccr8, Slc25a38, Rpsa, Snora62, EG546166, Mobp, LOC100039898
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403D13.T7 (MSMg01no403_d13.b1)MSMg01-403D13.TJ (MSMg01no403_d13.g1)
ACCAG502182AG502183
length758747
length of high quality
(start - end)
493 (61 - 553)388 (69 - 456)
definitionCHROMAT_FILE: MSMg01no403_d13.b1 PHD_FILE: MSMg01no403_d13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:25 2005CHROMAT_FILE: MSMg01no403_d13.g1 PHD_FILE: MSMg01no403_d13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,158,943 - 119,159,336)(118,978,043 - 118,978,430)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CCATTTCACAGGGCTACACAGAGAAACCCTGTCTTGTTAGGATAATCTTT
GTGCACTATGTAAAAGTTGTCTCTGCATTATTCAAATGTTGATTTCCTAC
CAATAGAGAGCTGAGAATGGACGTTGGTATTGCTATTCCAGTTGTTCAGT
ACCTGCATCATATTTTGTAAACATTCACCTCCTTCACCTTCTCACTGGTT
TAATAAAGAGCTGGCAGCGTGAAGGCACAATAGGAAAAGCAGAACTTCTG
GGCAGAGATAGGAGCTGTAGGAAGAATTGAGAGGTGTGGAAGTTGCCAGC
CAGAGAGGGAGGAAGTCTGACAAACTGAGTCGTTGTAAGAGTTGGTTGCA
AACGTGGACTAGTATAGATGGGCTAGTGAAGTTATACGAGCTAGTTGGGA
AATCGCCTAAGCAAAGGCCTGAGTTTTAATAAGTAATAATTGTCTCTATG
TCATTTTGGAAGCTGGCAGGTCAACACAGCTGATTATTCTGTGCGTTTTG
TATTAATGGAGTCACAGCGTTTTTTATTTTCTCATCGGCTGTTTTGCCCA
CACAATGTCCTTGTGGTGCATCCATATTGTAGCAACTCTCAGATGACTTC
TGTAGGTTGAAGTGCTTCCGTCCTGTGAATACCGGATATTGCTGCTACCA
CCTCTGTGTGTAACACGGCTTTTTATTTTTTTGAAATATACTCCTCTTAT
TTGCATTG
ATAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTGTGAGCCCATGAGATGGTATCCACGACCAGC
CAGAAATTGTTACGTGACAGGTAACAAGATGTGACGTGTCTGTGTGCACA
CATTAGATGACAGTAACTGGCTGTGGTCAGCTATCTGGCTCTATGGCAAC
GGGCAACGTGTCTCTGCAGCTGCGATACCGTGCGCATGTCATTGTGTGTG
GTAGCGTGTGCGTGTGTATGTGAGTGTGTGCGTGGTCGTGTGTGACTGTG
TATGCTACTGTCTCTGTTGGGATAAGGTTGAGCCCTGAGGACATCTCAGA
GGAAACCCAAGCCCAGACTCCACCCCCTCTCCCCCACTGCACAGCCCACC
ACATTGCCCAGTCAGCCCCTCTCTGACCAATCATCTCCCCTGACTCCACC
CCCTTAGCCCAGAATGGCCTCAAACTAACTATGTAACCCTGAACTTCCGA
TCTGAGTCCATCTCCCAAGTGCTGGGAATATAGACCTAGCCCACCCCCTC
CTGCTTACGTGGCACTTGCGTGTCTAGGCCTTTGCTTATCAACCACTTGA
ACTGAATACCATTCCCCATCCCTCTTTTACGCTTATAATCCCTCTGTGCA
TCGCTAACCTTTATCTCTCCCCGCAATCCTATAATTTTTTTGATACTGAT
TCTCCTGCTCTCTACTTTGCTTTGTGTCCTCTGTTCCCTTACCGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_d13.b1 MSMg01no403_d13.b1 CHROMAT_FILE:
MSMg01no403_d13.b1 PHD_FILE: MSMg01no403_d13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:25 2005
         (493 letters)



>mm_chr9_119158444_119159336
          Length = 893

 Score =  731 bits (378), Expect = 0.0
 Identities = 390/394 (98%)
 Strand = Plus / Minus

                                                                       
Query: 100 gctgagaatggacgttggtattgctattccagttgttcagtacctgcatcatattttgta 159
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893 gctgagaatggacgttggtattgctattccagttgttcagtacctgcatcatattttgta 834

                                                                       
Query: 160 aacattcacctccttcaccttctcactggtttaataaagagctggcagcgtgaaggcaca 219
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 aacattcacctccttcaccttctcactggtttaataaagagctggcagcgtgaaggcaca 774

                                                                       
Query: 220 ataggaaaagcagaacttctgggcagagataggagctgtaggaagaattgagaggtgtgg 279
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 ataggaaaagcagaacttctgggcagagataggagctgtaggaagaattgagaggtgtgg 714

                                                                       
Query: 280 aagttgccagccagagagggaggaagtctgacaaactgagtcgttgtaagagttggttgc 339
           ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 713 aagttgccagccagaaagggaggaagtccgacaaactgagtcgttgtaagagttggttgc 654

                                                                       
Query: 340 aaacgtggactagtatagatgggctagtgaagttatacgagctagttgggaaatcgccta 399
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 aaacgtggactagtatagatgggctagtgaagttatacgagctagttgggaaatcgccta 594

                                                                       
Query: 400 agcaaaggcctgagttttaataagtaataattgtctctatgtcattttggaagctggcag 459
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 agcaaaggcctgagttttaataagtaataattgtctctatgtcattttggaagctggcag 534

                                             
Query: 460 gtcaacacagctgattattctgtgcgttttgtat 493
           |||||||||| ||||||||||||| |||||||||
Sbjct: 533 gtcaacacagttgattattctgtgtgttttgtat 500


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no403_d13.g1 MSMg01no403_d13.g1 CHROMAT_FILE:
MSMg01no403_d13.g1 PHD_FILE: MSMg01no403_d13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:25 2005
         (388 letters)



>mm_chr9_118977843_118978630
          Length = 788

 Score =  727 bits (376), Expect = 0.0
 Identities = 385/388 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgagcccatgagatggtatccacgaccagccagaaattgttacgtgacaggtaacaag 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtgagcccatgagatggtatacacgaccagccagaaattgttacgtgacaggtaacaag 260

                                                                       
Query: 61  atgtgacgtgtctgtgtgcacacattagatgacagtaactggctgtggtcagctatctgg 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgtgacgtgtctatgtgcacacattagatgacagtaactggctgtggtcagctatctgg 320

                                                                       
Query: 121 ctctatggcaacgggcaacgtgtctctgcagctgcgataccgtgcgcatgtcattgtgtg 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctctatggcaacgggcaaagtgtctctgcagctgcgataccgtgcgcatgtcattgtgtg 380

                                                                       
Query: 181 tggtagcgtgtgcgtgtgtatgtgagtgtgtgcgtggtcgtgtgtgactgtgtatgctac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggtagcgtgtgcgtgtgtatgtgagtgtgtgcgtggtcgtgtgtgactgtgtatgctac 440

                                                                       
Query: 241 tgtctctgttgggataaggttgagccctgaggacatctcagaggaaacccaagcccagac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtctctgttgggataaggttgagccctgaggacatctcagaggaaacccaagcccagac 500

                                                                       
Query: 301 tccaccccctctcccccactgcacagcccaccacattgcccagtcagcccctctctgacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tccaccccctctcccccactgcacagcccaccacattgcccagtcagcccctctctgacc 560

                                       
Query: 361 aatcatctcccctgactccaccccctta 388
           ||||||||||||||||||||||||||||
Sbjct: 561 aatcatctcccctgactccaccccctta 588


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 788
Length adjustment: 9
Effective length of query: 379
Effective length of database: 779
Effective search space:   295241
Effective search space used:   295241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)