BAC Information

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BAC

Clone NameMSMg01-403E24
Chromosome9 (Build37)
Map Location 87,885,343 - 87,885,764
singlet/doubletsinglet
Overlap genenone
Upstream geneC030002E08Rik, Cyb5r4, LOC666777, LOC244958, LOC100039510, 4922501C03Rik, LOC671706, Tbx18, LOC671731
Downstream geneLOC100039580, LOC384962, EG272633, Nt5e, Snx14, LOC100039601, Syncrip, 2810026P18Rik, 4930422I07Rik, EG547109, LOC100039707, LOC100039721, Bcl2a1d, LOC100039674, EG666731, LOC100039741, Bcl2a1a, LOC100039689
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403E24.T7 (MSMg01no403_e24.b1)MSMg01-403E24.TJ (MSMg01no403_e24.g1)
ACCAG502252AG502253
length811894
length of high quality
(start - end)
427 (38 - 464)---
definitionCHROMAT_FILE: MSMg01no403_e24.b1 PHD_FILE: MSMg01no403_e24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:33 2005CHROMAT_FILE: MSMg01no403_e24.g1 PHD_FILE: MSMg01no403_e24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCACAGGATCCGCGGAATTCTG
TTTGTTCATATATTCAGTTTGAAATACATATTATTCTTCTTTGCTTCTAT
TCATGAAAAATAGTCTATTCATTAGTGACATATAATACATTAGCTTCATT
TAATTGTCTCATTTAAATATTCTCAATTTTTAAAAATTGGATAACAATTA
TATTTCAATTTGTTTTTATGGTTAGAACTTTAAATAGTTCCATTATGTGC
CTTCTCCTATGTTGTATTGAACAACTTATAAGGAAATGATTCCATAAGAA
ATGGGCTTTTAGAATTTGATTAAATGAGTTTTGGGGCAATACTGGGGATG
TCTTCAGAATATCATGGTGAGCTCTGATGCCCCACAATCCACAATGCATG
AAGAGGAAACGTAGAGTTGTAAAATAGACTATCATACCACCAGGCCACCA
GTGTCTATCGGAATTGTCAGAAGGTAGAGCTGGTTCTGACTGAGCATATG
AAAGGTCATTCCATGAAGCAGTAATCATTTTTTAAGCCTTAGATTTCTTA
TAAAGGCCCGCATTGTTATGAAAAATTATATAAAGAAATTTTTTGTCCCA
TGAAAGGTTTTAAATATTTAGCCCCTCCGGTTTTTAATTCATTAACGGGA
CAAAAATGTGGCCAAAAAAAGGGGGTTATTTTTGTGCTTAAATTCCCAAA
GGCCCCTGGTTTCCTTTAAACCGGGCAAAAAACCAAATATTTCTCTGTTG
GGATCCCCCCCTTTTTTGGGCATCTTTCTCAATTACTTGTGGGCGGGTAT
CCCTCTTTCAN
AAACCTGGGGNNGNCTGGTCTTCGACTTTANGTGACCTATANAANGATTC
GCGAAATTCTCTGTANCACTTATCAAANNGTTTTGTGGAGAAAGCGAAAC
TTCACAGGCATGGGTCTGTGTGGGAGGGANNNGNNTGATCTTTCTACCCC
TGGAGGGACACCCTAGTCGCGGTTGCACCGACNTCCAGCCTTCCTCCCCC
TTTCGCCTCAAACCTCGAGACCCGCTCGGGGGGGTTTTTTTTTNNNNNNN
TTTCNCCAAAAAAAATTTGGCTTTTTTTTTGGGAAGGGGTTTTCCCCCTT
CTCTTTTTTTTTANNTTTGGTAAAAAGTTTTTAAAAATTGTTTTAAAAAA
AAAGGTGTAAAAATGNTTTTTTGGTTTTTAAAAATTTTTTTTTTGTNNTT
TTTTTNCTTTTTNNNNNNTTTTTTCTTTTTTTTTTTTTTNNNTTNATNNN
NNCNCTTTTNNTTTTTTTTTTTTCTTTTTCTTTGTTTTNNNNNANTTTTT
TTTTTTTTNCTCTTTTTTNNNNTTTTTNCCTTNTTTTTTTTNNNTTTTGN
TTNNNTTTTTTTTNTTTTTTTTTTTTTTTTTNTTTNNTTTTTTTTTTTTT
TTTTTTTTTTCCCTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTCTCC
CTTTTTTNNNCTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTT
TTTTCTTTTTTTTTNTTTTTTTTTTTTTTTTTNNNNNTTTTTTTNTTTTT
TTTNTTTTTTTTTTCCNTTTTNTATATTTTTTTCCCTTTTTTTCTTCCTC
TNTTCTTTTCCTTCCTTTTTTTTTTTTTTTCTCCTTTTCTTTTNNTTTCT
TTNNNTCTTTTTCCTTTCTCTTTTTTCCCTTTCATCTGTCACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_e24.b1 MSMg01no403_e24.b1 CHROMAT_FILE:
MSMg01no403_e24.b1 PHD_FILE: MSMg01no403_e24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:33 2005
         (427 letters)



>mm_chr9_87885138_87885964
          Length = 827

 Score =  816 bits (422), Expect = 0.0
 Identities = 422/422 (100%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattctgtttgttcatatattcagtttgaaatacatattattcttctttgcttctattc 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctgtttgttcatatattcagtttgaaatacatattattcttctttgcttctattc 265

                                                                       
Query: 66  atgaaaaatagtctattcattagtgacatataatacattagcttcatttaattgtctcat 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 atgaaaaatagtctattcattagtgacatataatacattagcttcatttaattgtctcat 325

                                                                       
Query: 126 ttaaatattctcaatttttaaaaattggataacaattatatttcaatttgtttttatggt 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ttaaatattctcaatttttaaaaattggataacaattatatttcaatttgtttttatggt 385

                                                                       
Query: 186 tagaactttaaatagttccattatgtgccttctcctatgttgtattgaacaacttataag 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tagaactttaaatagttccattatgtgccttctcctatgttgtattgaacaacttataag 445

                                                                       
Query: 246 gaaatgattccataagaaatgggcttttagaatttgattaaatgagttttggggcaatac 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gaaatgattccataagaaatgggcttttagaatttgattaaatgagttttggggcaatac 505

                                                                       
Query: 306 tggggatgtcttcagaatatcatggtgagctctgatgccccacaatccacaatgcatgaa 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tggggatgtcttcagaatatcatggtgagctctgatgccccacaatccacaatgcatgaa 565

                                                                       
Query: 366 gaggaaacgtagagttgtaaaatagactatcataccaccaggccaccagtgtctatcgga 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gaggaaacgtagagttgtaaaatagactatcataccaccaggccaccagtgtctatcgga 625

             
Query: 426 at 427
           ||
Sbjct: 626 at 627


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 827
Length adjustment: 9
Effective length of query: 418
Effective length of database: 818
Effective search space:   341924
Effective search space used:   341924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)