BAC Information

Click to search

BAC

Clone NameMSMg01-403P24
Chromosome9 (Build37)
Map Location 101,461,896 - 101,629,565
singlet/doubletdoublet
Overlap genenone
Upstream geneTmem22, LOC667486, Stag1, LOC100040990, Pccb, LOC100041013, LOC100040707, Msl2l1, 3222402P14Rik, LOC100041065, EG382099
Downstream geneEphb1, 9630041A04Rik, Ky, LOC664843, Cep63, Anapc13, Amotl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403P24.T7 (MSMg01no403_p24.b1)MSMg01-403P24.TJ (MSMg01no403_p24.g1)
ACCAG502777AG502778
length813787
length of high quality
(start - end)		425 (33 - 457)327 (72 - 398)
definitionCHROMAT_FILE: MSMg01no403_p24.b1 PHD_FILE: MSMg01no403_p24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:30 2005CHROMAT_FILE: MSMg01no403_p24.g1 PHD_FILE: MSMg01no403_p24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,461,896 - 101,462,283)(101,629,239 - 101,629,565)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGA
ATTCCATCTGTTTTCCCCCGCAACGCTGTCAAGTCCACAGTAAACTCGGA
TAACGGGCAATGAATCCTGGGGCAGTGAAATGAATCAAAGATGTGCAAAC
AAACCACAGCCTGATGAGATCTCAGTTGAGCATCCCCCGGTGCGCACCGA
TGGAAGAAGTCAACCTTTGCCCTTCTTATCTTTGTGAGAAGAATCAGAAG
AGCGGCCCCGAGCAGTTCATATTTACCTGGACCTGTTCCTTGATCAGTTT
CTTTAGAGCGAAAACACTACCCACATTTCTATTTTTCTGTGCACAAACGT
TTGGAATAGTCAGGGCGGCAGATCTCCCTGGTGACAAGAGGCCCAAGTGT
AGCTCTGAGCTGCTGGGCATGAGAATGTGAGCTTGTATGACTGTTCCCAG
CAATGAGAGACAAGTAGAGACCTGTTGTGCTTGGAAAGACTCCTATGATA
ACCGCTTGTTATTCCAAGTTTGCCACATAAAACCAATGCGGGGGGCTTCT
AAATCTACCGCTTTCCAACTTGAATCTGACCAATTGAATGGCTTAAATGG
CCTGTCCCGTTTTTTTTTTTTCTCCCTCGTCCTCTTTTTTTTTCGCTCCC
CTCTTTTTCCCCTTCTCCCTTTTTCTTTCTCTATTATCCATTCTCTCTCT
TCTTTTTCTCCCTTTTTTTTCTCCTCCCTCCTTTTTTTTTCTCTTTTTTC
TCTTTTTTCTTCCCTTCTTCTCCCTCATTTTTCTTTTTTCCCCCTTCTCT
TATCTCTTTTTTG

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTCACTCCTGGCACACCCTGATTACTCAT
GACTAATTTGAATTGGGCATCATTGAAATTTCTGGCTCCATTATTAGATT
TCAAGGTTGTCTATACCACACTCCAGCCTCCCACCAACACCCACTCACTC
CCAAACACAAAAACAAACACTCAGAGTTGGGTGGTGGAAGCAAGAAGCAA
ATGCTTGCAACAAGGTAGAGAGGAGTGGGGTTTCTTTTAATGCACAGGGA
AGCTTTGCAGAAAGGACACAGAATCTTCCTAGCACACTCTTTGTAGGGGG
TTGGCCTGATGCTGCTTGTGTATTAATGCTAAATACTGATCCTCAAGTGA
TGCCCCTCCCCCAGGGAACAGACCAACACATACTTCAGTGAGGGTATGTG
AACCTTTCCCCCAATTTAACTGTTCACCAAATGTTACAATTTGTCCTCGG
TTTGTTTATTCAATAGTCATATTTGTCACTTCCTATATACCCCCCCTTTT
CTCCACCCTCCCTTTCCTTTTTCTTTTTCTCCCCCCTTCTCCTTTTCCCC
CCCTTTTTTTTTTCTTTCCCTCCCTCCCTCCCCTCCCCCTTTTTATCCAC
CTTCTTTTCCTTCTTTTCTTTTCCCCTTTCTTTTCCCTTTTCTTCCCCTT
CTTTTCCCTCCCTCCTCCTCTTTCCTCCCCCTCACTATTCCCCTCCTTTT
CTTCTTCTTTATAACCATTTTCCCTCTTATTTCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_p24.b1 MSMg01no403_p24.b1 CHROMAT_FILE:
MSMg01no403_p24.b1 PHD_FILE: MSMg01no403_p24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:30 2005
         (425 letters)



>mm_chr9_101461659_101462483
          Length = 825

 Score =  743 bits (384), Expect = 0.0
 Identities = 387/388 (99%)
 Strand = Plus / Plus

                                                                       
Query: 38  gcaacgctgtcaagtccacagtaaactcggataacgggcaatgaatcctggggcagtgaa 97
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 gcaacgctgtcaagtccacagtaaactcggataacgggcaatgaatcctggggcagtgaa 297

                                                                       
Query: 98  atgaatcaaagatgtgcaaacaaaccacagcctgatgagatctcagttgagcatcccccg 157
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 atgaatcaaagatgtgcaaacaaaccacagcctgatgagatctcagttgagcatcccccg 357

                                                                       
Query: 158 gtgcgcaccgatggaagaagtcaacctttgcccttcttatctttgtgagaagaatcagaa 217
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 gtgcgcaccgatggaagaagtcaacctttgcccttcttatctttgtgagaagaatcagaa 417

                                                                       
Query: 218 gagcggccccgagcagttcatatttacctggacctgttccttgatcagtttctttagagc 277
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 gagcggccccgagcagttcatatttacctggacctgttccttgatcagtttctttagagc 477

                                                                       
Query: 278 gaaaacactacccacatttctatttttctgtgcacaaacgtttggaatagtcagggcggc 337
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gaaagcactacccacatttctatttttctgtgcacaaacgtttggaatagtcagggcggc 537

                                                                       
Query: 338 agatctccctggtgacaagaggcccaagtgtagctctgagctgctgggcatgagaatgtg 397
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 agatctccctggtgacaagaggcccaagtgtagctctgagctgctgggcatgagaatgtg 597

                                       
Query: 398 agcttgtatgactgttcccagcaatgag 425
           ||||||||||||||||||||||||||||
Sbjct: 598 agcttgtatgactgttcccagcaatgag 625


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 825
Length adjustment: 9
Effective length of query: 416
Effective length of database: 816
Effective search space:   339456
Effective search space used:   339456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no403_p24.g1 MSMg01no403_p24.g1 CHROMAT_FILE:
MSMg01no403_p24.g1 PHD_FILE: MSMg01no403_p24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:30 2005
         (327 letters)



>mm_chr9_101629039_101629765
          Length = 727

 Score =  578 bits (299), Expect = e-169
 Identities = 320/327 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcactcctggcacaccctgattactcatgactaatttgaattgggcatcattgaaattt 60
           ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 527 ctcactcctagcacaccctgattactcgtgactaatttgaattgggcatcattgaaattt 468

                                                                       
Query: 61  ctggctccattattagatttcaaggttgtctataccacactccagcctcccaccaacacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 ctggctccattattagatttcaaggttgtctataccacactccagcctcccaccaacacc 408

                                                                       
Query: 121 cactcactcccaaacacaaaaacaaacactcagagttgggtggtggaagcaagaagcaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 cactcactcccaaacacaaaaacaaacactcagagttgggtggtggaagcaagaagcaaa 348

                                                                       
Query: 181 tgcttgcaacaaggtagagaggagtggggtttcttttaatgcacagggaagctttgcaga 240
           |||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||
Sbjct: 347 tgcttgcaacaaggtagagaggagtgtgatttcttttaatgcacagggaagccttgcaga 288

                                                                       
Query: 241 aaggacacagaatcttcctagcacactctttgtagggggttggcctgatgctgcttgtgt 300
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 287 aaggacacagaatcttcctagcacattctttgtagggggttggcctgatgctgcttgtgt 228

                                      
Query: 301 attaatgctaaatactgatcctcaagt 327
           | |||||||||||||||||||||||||
Sbjct: 227 actaatgctaaatactgatcctcaagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |