BAC Information

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BAC

Clone NameMSMg01-404C07
Chromosome9 (Build37)
Map Location 122,257,828 - 122,258,204
singlet/doubletsinglet
Overlap genenone
Upstream geneTrak1, Cck, Lyzl4, Vipr1, LOC100040063, Sec22c, Deb1, Nktr, Kbtbd5, Hhatl, Ccdc13, Higd1a, Ccbp2, Cyp8b1, C730027P07Rik, C85492, LOC100040121, Snrk, Tmem16k
Downstream geneAbhd5, LOC100040193, LOC100040204, 9530059O14Rik, LOC666218, LOC671232, D9Ertd402e, Zfp445, LOC623874, Zfp167, EG666257, Zfp660, Zfp105, 1110059G10Rik, Kif15, Tmem42, Tgm4, Zdhhc3, Exosc7, Clec3b, Cdcp1, Tmem158, Scp2-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404C07.T7 (MSMg01no404_c07.b1)MSMg01-404C07.TJ (MSMg01no404_c07.g1)
ACCAG502886AG502887
length763766
length of high quality
(start - end)
246 (66 - 311)368 (66 - 433)
definitionCHROMAT_FILE: MSMg01no404_c07.b1 PHD_FILE: MSMg01no404_c07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:42 2005CHROMAT_FILE: MSMg01no404_c07.g1 PHD_FILE: MSMg01no404_c07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGCGGTCGCTAAACGACTCCTATTTTCAAAGAATCCGCGGAATTCTTAG
TAGCTGCATAAAAAGGTTGCTTGTTTACCTTGGCTGACAGTTTAAAGGAG
GCATGGTATGTTTTGGCTCGAGAATAAAGTCCACCATAGTGGGGAAGGCA
TGGAGGTGGGAGCTCGGGATAGCCATAGATTGTCATATGCATCTAGAGTC
AGGAACCAGAGTGTGTGTGCTGCTGCTCAGCTCTCATTTGTCTGGTTGTT
AGGATAGGTTTGTCTACCTCAGCTAATCTTTAATTCCTCACAGACCTCCT
CCTTCTCCCCTATTTTTTTTCTAGATAATCCTCTCAGGTAAGGACAGGAT
TGTCTCCTAGGTGATCCTGGATCCTACTCTGTCCCTTGCCAGCTTGGTAT
CCAAACACAGCACGTCTACCCCTTCCTTCCCTGAGACAGACAGGTTTGTG
GCTGTCTCAATGCTAACTGCATTCGGTCTAACTTCATAAGCCCCATAGTC
TTTAACAGTTCCAGTATTTCTAAAAGGTCCTGAGCCCGAGCCTCATCCGA
AATGGCTAGCCGTATCATTCTTGAGCACCTGTTATATGAACTACGCTTCC
CGCACACAATGTTTTTTAGATATATTTTCTTGAATTCTTAGAAAATCGCC
CGTGTTTTGTGCATTTTGGGGGTCCCACACTCCCGTTTTCCTCTTATTTA
GTTCCTCCCCGACGGTTGTGTCCTTTTTTCTCTTTCCATCACACCTTATT
TTTTCTATTTTTT
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAGTAACAAAACTCCAAAGTCTCCAACTCCTGTGGC
ACTTTCAAGAAGTTGGGCTGGCAAAAATGCACCCTTGGAAATCTTCATGG
ACCCTAGGCTTGCTCTAGAGTGTGGCTACTGAGCACTGAAAACAAACAAA
AAGCACACCATTAATCTAAAGCTGGTTCTGCGTGGAAACTGATGGAGCTG
TGCCCAGGGATATGGAATTTGATGACCTTCCCTAAGTCCACTCGATTTGG
CTTCACCTTGATGCTATATTGTCTTAGGGTTTTACTGCTGTGAACAGACA
CCATGACCAAGGCAACTCTTGTAAGGACAGCTTATAATTGGGGCTGGCTT
ACAGGTTCAGAGGTTCAATCCCTTATCATCAAGGTGGGAACATGGCAGTT
ATCCATGCAGGCATGGTGCAAAAGGAGCTGAAAGTTCTACATCTTCCTCT
GAATGCTGTTAGCCCAATAATGACTTTCATACTCCTAGAATGACGGCCTT
AAATCCCCAATCCTATGTTGATATAATTATTTCAAAAAGTCATTCATACC
CCCCCTTTTCAAATCTATTAATTTTACCCCTCCTTTTTTTATTCCCCCAT
CCTTCATTCCCCTGTTAATAGCTATTCTTTGCATATAAATACTATATCAA
CCTTTCATTCTCATCACTCTATTTTCTTCATTCTTTTACCACCCCCTTTT
CACTCTTATTCTATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_c07.g1 MSMg01no404_c07.g1 CHROMAT_FILE:
MSMg01no404_c07.g1 PHD_FILE: MSMg01no404_c07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:42 2005
         (368 letters)



>mm_chr9_122257742_122258514
          Length = 773

 Score =  584 bits (302), Expect = e-171
 Identities = 355/378 (93%), Gaps = 11/378 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtaacaaaactccaaagtctccaactcctgtggcactttcaagaagttgggctggcaaa 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 463 agtaacaatactccaaagtctccaactcctgtggcactttcaagaagttgggctggcaag 404

                                                                       
Query: 61  aatgcacccttggaaatcttcatggaccctaggcttgctctagagtgtggctactgagca 120
           |||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 403 aatgtacccttggaagtcttcatggaccctaggcttgctctagtgtgtggctactgagca 344

                                                                       
Query: 121 ctgaaaacaaacaaaaagcacaccattaatctaaagctggttctgcgtggaaactgatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 343 ctgaaaacaaacaaaaagcacaccattaatctaaagctggttctgtgtggaaactgatgg 284

                                                                       
Query: 181 agctgtgcccagggatatggaatttgatgaccttccctaagtc------cactcgatttg 234
           |||||||  ||||||||||||||||||||||||||||||||||      ||||| |||||
Sbjct: 283 agctgtgtgcagggatatggaatttgatgaccttccctaagtccggggacactcaatttg 224

                                                                       
Query: 235 gcttcaccttgatgctatattgtc----ttagggttttactgctgtgaacagacaccatg 290
           ||||||||||||||||| ||||||    |||||||||||||| |||||||||| ||||||
Sbjct: 223 gcttcaccttgatgcta-attgtcttagttagggttttactgttgtgaacagagaccatg 165

                                                                       
Query: 291 accaaggcaactcttgtaaggacagcttataattggggctggcttacaggttcagaggtt 350
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 164 accaaggcaactcttgtaaggacaggttataattggggctggcttacaggttcagaggtt 105

                             
Query: 351 caatcccttatcatcaag 368
           ||||||||||||||||||
Sbjct: 104 caatcccttatcatcaag 87


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 773
Length adjustment: 9
Effective length of query: 359
Effective length of database: 764
Effective search space:   274276
Effective search space used:   274276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)