BAC Information

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BAC

Clone NameMSMg01-405B21
Chromosome9 (Build37)
Map Location 93,704,557 - 93,705,068
singlet/doubletsinglet
Overlap geneLOC674371
Upstream geneLOC100040114
Downstream geneLOC384967, EG384968, 1190002N15Rik, EG667601, Slc9a9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405B21.T7 (MSMg01no405_b21.b1)MSMg01-405B21.TJ (MSMg01no405_b21.g1)
ACCAG503624AG503625
length798785
length of high quality
(start - end)		516 (48 - 563)457 (77 - 533)
definitionCHROMAT_FILE: MSMg01no405_b21.b1 PHD_FILE: MSMg01no405_b21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:01 2005CHROMAT_FILE: MSMg01no405_b21.g1 PHD_FILE: MSMg01no405_b21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAAAAGTTCTCATTTAAATCTAGAGCAATGGTGAATAAAATAAA
GGAGGAATTCAGGGTCTGCAGGAGAAAGTCAACAACATAGATGAGAAGGG
AAGCACAGAAGATGAACCAGAATGTGAACACTTCAGAAAGAAGATGAGAT
TTGAGGGAAAAATGACAGAGTTGGGTGTGAAGAAAATGTATTTGGAAATG
AAAAATCTAATCAATCAAATCAAAAATGCAGAGTAAAGCATCATCATTAA
AGTAGACAGCAACAGAAAGAATATTAAATATAGTAGACAGGATCAATTTT
CTAGAACATTCAAGTCCAAAATCATCAAGATAAAGAACAATAAAACCTGT
CGGGCATGGTGGTGCACGCCTTTAATCCCAGCATTTGGGAGGCAGAGGCA
GGCAGTTTTCTGAGTTCAAGGTCAGCCTGGTCTACAGAGTGAGTTCCAGG
ACAGCCAGGACTACACAGAGAAACCCTGTCTCANAACAAAACAACACAAG
ACAAAAACGAACAAACTAAAGAACAATAAAACCTAGACTAAGCAAGCAAA
ATGACTTCCTGGCTTAATGTTCCTTGATACCCCGCCCGATGATAAAAGTT
TGAGTCCCTGGAACTCCTTTGAAAGAAGAAAAAAAAACAATCCCCTCCCG
TTGGCCGGGGAATTCCACGGGGGGGGGGTGGGGGGGGTGGTTTGTTCNTT
ACCCACACACCCACCCCCTCTCCCACCTTTCTTCTTTTCTCTTCCCCG

NCAATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCT
TAGAAGCACCTGAAAAGATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACTTCACTCCAGTCAGAATGGCTAAGA
TCAAAATTTCAGGTGACAGCAGATGCTGGCGAGCATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAA
ATCAGTCTGGTGGTTCCTCAGAAAATTGGACATAGTACTACAGGAGGATC
CCGCAATAACTCTCCTAGGCATATATCAAGAAGATGTTCCAACCGGTAAG
AAGGACACATGCTCCACTATGTTCATAGCAGCCTTGTTTATAATAGCCAG
AAGCTGGAAAGAACCCAGATACCCCTCAACAGAGGAATGGATACAAAAAA
TGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTACGAAATTCCTGGGCAAATGGTTGGACCTGGAGGGCATCATCCTGAG
TGAGGGAACCCAATCCCAAAAGAACTCAAAGGAAATGTACTCCCTGATTA
GGTGGATATTACCCCCAAAACTTAATAAATCCGGCCGTAAAGGTTCAAGA
TCGCAAACCCCTGTAACTGAAAAAGAATAAAAACCCCACTGTGGTCACCC
TTTCTTTCTTTCTTTAATTTGTTACTTCTCCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_b21.b1 MSMg01no405_b21.b1 CHROMAT_FILE:
MSMg01no405_b21.b1 PHD_FILE: MSMg01no405_b21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:01 2005
         (516 letters)



>mm_chr9_93704518_93705433
          Length = 916

 Score =  938 bits (485), Expect = 0.0
 Identities = 505/512 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaaagttctcatttaaatctagagcaatggtgaataaaataaaggaggaattca 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 gaattcaaaagttcacatttaaatctagagcaatggtgaataaaataaaggaggaattca 492

                                                                       
Query: 65  gggtctgcaggagaaagtcaacaacatagatgagaagggaagcacagaagatgaaccaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 gggtctgcaggagaaagtcaacaacatagatgagaagggaagcacagaagatgaaccaga 432

                                                                       
Query: 125 atgtgaacacttcagaaagaagatgagatttgagggaaaaatgacagagttgggtgtgaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 atgtgaacacttcagaaagaagatgagatttgagggaaaaatgacagagttgggtgtgaa 372

                                                                       
Query: 185 gaaaatgtatttggaaatgaaaaatctaatcaatcaaatcaaaaatgcagagtaaagcat 244
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gaaaacgtatttggaaatgaaaaatctaatcaatcaaatcaaaaatgcagagtaaagcat 312

                                                                       
Query: 245 catcattaaagtagacagcaacagaaagaatattaaatatagtagacaggatcaattttc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 catcattaaagtagacagcaacagaaagaatattaaatatagtagacaggatcaattttc 252

                                                                       
Query: 305 tagaacattcaagtccaaaatcatcaagataaagaacaataaaacctgtcgggcatggtg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 251 tagaacattcaagtccaaaatcatcaagataaagaacaataaaacctgttgggcatggtg 192

                                                                       
Query: 365 gtgcacgcctttaatcccagcatttgggaggcagaggcaggcagttttctgagttcaagg 424
           |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 191 gtgcacgcctttaatcccagcacttgggaggcagaggcaggcagatttctgagttcaagg 132

                                                                       
Query: 425 tcagcctggtctacagagtgagttccaggacagccaggactacacagagaaaccctgtct 484
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 131 tcagcctggtctacagagtgagttccaggacagtcaggactacacagagaaaccctgtct 72

                                           
Query: 485 canaacaaaacaacacaagacaaaaacgaaca 516
           || |||||||||||||||||||||||||||||
Sbjct: 71  caaaacaaaacaacacaagacaaaaacgaaca 40


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space:   458436
Effective search space used:   458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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