BAC Information

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BAC

Clone NameMSMg01-405C14
Chromosome9 (Build37)
Map Location 123,176,511 - 123,346,866
singlet/doubletdoublet
Overlap geneScp2-ps2, Lars2
Upstream geneTmem16k, Abhd5, LOC100040193, LOC100040204, 9530059O14Rik, LOC666218, LOC671232, D9Ertd402e, Zfp445, LOC623874, Zfp167, EG666257, Zfp660, Zfp105, 1110059G10Rik, Kif15, Tmem42, Tgm4, Zdhhc3, Exosc7, Clec3b, Cdcp1, Tmem158
Downstream geneLimd1, Sacm1l, Slc6a20, Xtrp3s1, Ccr9, LOC100043855, Lztfl1, Fyco1, Cxcr6, Xcr1, LOC100040443, LOC100043858, LOC671399, Ccr1, Ccr1l1, Ccr3, Ccr2, Ccr5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405C14.T7 (MSMg01no405_c14.b1)MSMg01-405C14.TJ (MSMg01no405_c14.g1)
ACCAG503658AG503659
length760747
length of high quality
(start - end)		249 (77 - 325)393 (77 - 469)
definitionCHROMAT_FILE: MSMg01no405_c14.b1 PHD_FILE: MSMg01no405_c14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:04 2005CHROMAT_FILE: MSMg01no405_c14.g1 PHD_FILE: MSMg01no405_c14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,176,511 - 123,176,759)(123,346,476 - 123,346,866)
sequence
NCCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAGGGGGTTTCCATTTGGCACACCTGGGAGATGGAACTGGC
TGTCAAAGCCAAAGCAATAGAATGGTCCCCTCTGCCACCAACAGTGTCGT
AAACATCTACTTCATACTGCTTCTAAACACACCACATCCCCCTCAAATGG
AATAATTGGCATTCCATTTATAGGGGTGGAGAGGAGATGGGGGAGCAAAA
GCCCGTTTCGGGGAGCTGGGAACATTGCAACACGGTTTTCATGGCCTTGA
ATGCCTTCTGACCACAGTCTGCATTCTGTATCCAGTGTCAGTCCCATGCT
TTCAGAGAACCATGGTTTGCTGGGACATGCTCATTCGTGCAGGTCCCTGC
CTGGCTCGCTCTTCATGTTGAGGTCACTTCTGAGTGCCCCCACTCTCTTT
TTATGTTTTAGTCCCCAGATTTGGAGATTTGAAGGAATTATGACTATGAC
ATTTGAAACCTGGCAAGTCTGACTTGTGTGACTTGTGACAGGAATCTGCC
TCTCTGTGTCTCAGTTTTCTTCTTGACTGTTTTTGAATGTCTGTTCTTTT
AAGTTTGTCCTAAGTATCCTTCTTTGCTGAGAATTTAATCACAATACTTC
TACTTTAGTTTTTTTTTTTCTTTCCACCCTCTTCTACTAATTTTTCTCGT
TCTAATTTGATTAATTCACTTTTTTTTATTTTTGGTTCTTTTTCCCCTTT
TTTCTTCCCT

NNGGCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCAGGGCAGGAACTGTCAGAGAA
GTTCCTAGGGAATCCTGTGTGCCACCAGAGAGGGGTGCCAATCTCCACAG
TGGTTCTCTAAAGTAAAGCCAGGTCTTTATGTGGATAGCATCTTACTTCT
GACGATGGAAGTAACTGGAAGATAAGGCACCTTCTTTTTCTTGCCCAACT
TGGGGAACACGGAGAAGAACAGAGACCCAGAAGCAATTACATCTGAGTGA
CACTCATTATGCTCACTTCCACTACTGTCGCCTTGGGCTTGAAGGCAACT
ATGTGTTACCACTGATACCAAGCCCTGGATGGTCGGGAAGAGGTGCTGGG
GCAGATGAAGGGGGCATGAGGTCCTTCACTGGGTTGAGGTCCCTTCATTG
GGTTGGGCTAGGTAGGAACAGTATAATCTGGTTCAGCAGAATTGGGCCAA
AGTTGTTACAGATGCTGCCTCATTTGGTCTTCTAGTATGCCCGGCAATTA
TGAGGCAGATTACCCCATGTCCCGTTGTTCTTTTTTATAGAGTGACTTTT
TGCCCCTTTCCCTTTTATTGTTCCCCTATTTTATCCCCATATTGGTTTAT
TTTTCAATTCCCATTTATTCTGCCCCCTCTATTCCTCTTTTTTTTTCTTT
TCCTTCTTTCCTCTTCTTTCTTTTTTTCCCCTCTCTTTCCTATTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_c14.b1 MSMg01no405_c14.b1 CHROMAT_FILE:
MSMg01no405_c14.b1 PHD_FILE: MSMg01no405_c14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:04 2005
         (249 letters)



>mm_chr9_123176311_123176959
          Length = 649

 Score =  466 bits (241), Expect = e-136
 Identities = 247/249 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcacacctgggagatggaactggctgtcaaagccaaagcaatagaatggtcccctctgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcacacctgggagatggaactggctgtcaaagccaaagcaatagaatggtcccctctgcc 260

                                                                       
Query: 61  accaacagtgtcgtaaacatctacttcatactgcttctaaacacaccacatccccctcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accaacagtgtcgtaaacatctacttcatactgcttctaaacacaccacatccccctcaa 320

                                                                       
Query: 121 atggaataattggcattccatttataggggtggagaggagatgggggagcaaaagcccgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atggaataattggcattccatttataggggtggagaggagatgggggagcaaaagcccgt 380

                                                                       
Query: 181 ttcggggagctgggaacattgcaacacggttttcatggccttgaatgccttctgaccaca 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttggggagctgggaacattgcaacacggttttcatggccttgaatgccttctgaccaca 440

                    
Query: 241 gtctgcatt 249
            ||||||||
Sbjct: 441 atctgcatt 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no405_c14.g1 MSMg01no405_c14.g1 CHROMAT_FILE:
MSMg01no405_c14.g1 PHD_FILE: MSMg01no405_c14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:04 2005
         (393 letters)



>mm_chr9_123346276_123347068
          Length = 793

 Score =  702 bits (363), Expect = 0.0
 Identities = 384/391 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcagggcaggaactgtcagagaagttcctagggaatcctgtgtgccaccagagaggggt 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 ctcagggcgggaactgtcagagaagttcctagggaatcctgtgtgccaccagagaggggt 532

                                                                       
Query: 61  gccaatctccacagtggttctctaaagtaaagccaggtctttatgtggatagcatcttac 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 531 gccaatctccacagtggttctctaaaggaaagccaggtctttatgtggatagcatcttac 472

                                                                       
Query: 121 ttctgacgatggaagtaactggaagataaggcaccttctttttcttgcccaacttgggga 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 ttctgacgatggaagtaattggaagataaggcaccttctttttcttgcccaacttgggga 412

                                                                       
Query: 181 acacggagaagaacagagacccagaagcaattacatctgagtgacactcattatgctcac 240
           |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 411 acacggagaagaacagagacccggaagcaattacatctgagtgacactcattgtgctcac 352

                                                                       
Query: 241 ttccactactgtcgccttgggcttgaaggcaactatgtgttaccactgataccaagccct 300
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 ttccactactgtcgcctcgggcttgaaggcaactatgtgttaccactgataccaagccct 292

                                                                       
Query: 301 ggatggtcgggaagaggtgctggggcagatgaagggggcatgaggtccttcactgggttg 360
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 ggatggtcaggaagaggtgctggggcagatgaagggggcatgaggtccttcactgggttg 232

                                          
Query: 361 aggtcccttcattgggttgggctaggtagga 391
           |||||||||||||||||||||||||||||||
Sbjct: 231 aggtcccttcattgggttgggctaggtagga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 793
Length adjustment: 9
Effective length of query: 384
Effective length of database: 784
Effective search space:   301056
Effective search space used:   301056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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