BAC Information

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BAC

Clone NameMSMg01-405F24
Chromosome9 (Build37)
Map Location 118,525,090 - 118,525,534
singlet/doubletsinglet
Overlap geneItga9
Upstream geneLOC665840, LOC100039650, LOC100039681, Azi2, 2010110K16Rik, Eomes, Golga4
Downstream geneLOC100039768, Ctdspl, Vill, Plcd1, Dlec1, Acaa1b, EG546165, Slc22a14, Slc22a13, 9330176C04Rik, Oxsr1, Myd88, Acaa1a, Xylb, Acvr2b, Endogl1, Scn5a, Scn10a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405F24.T7 (MSMg01no405_f24.b1)MSMg01-405F24.TJ (MSMg01no405_f24.g1)
ACCAG503821AG503822
length774769
length of high quality
(start - end)
443 (77 - 519)416 (83 - 498)
definitionCHROMAT_FILE: MSMg01no405_f24.b1 PHD_FILE: MSMg01no405_f24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:20 2005CHROMAT_FILE: MSMg01no405_f24.g1 PHD_FILE: MSMg01no405_f24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCTTTCTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCCCTAGTTACCCCAAGAAAGGAAATATATAAAATGTA
AGGTTCAAAGAAAAAAGCCCCGCCAGGAAGATGAATGAAGCTAAATGTTG
CGATCAAGTAAGTATATTAAATGGTATTAAATGGCGACTTATGGATTTGC
AGTTGTACAGAGGAGAACTGTATCATGTTAGGCATTATTATTACCTGGCT
ATCGTTTTCACGTGGACATAAAGAGATACAAGTATATGTCAAATTGACAT
GAAAAAAAAAAAGGCTAAGGTATGGCTCAGCCTGGGGAAGAACTTGTCTC
TCAGAAAGAGATTTCAGTGGTGACATCCTGTGGTGACATCCTGGGGACCC
ATCTTCCTGGGGGGGAAAAATGATAGGCAGGAACATACCTTAGCCAGGAC
CTCCTTGACATGCATAGCTCGGCCCTCCATTTAAACAGTAACCTCACTTC
AAGACCTGAAGACAGACTTGTGCAGAGGGAGCGTTCCTGGATCGTCTGCC
CCCCTCCCCAGTCTGTTCACATTTGAAAAACATCTCCCCTGCTTTTCCCT
ACTAGTTTGGCAGCTTTTAATTGGCTAATGGAGGATGGGTGACTGAACCT
GGCCTTGGGACCACAGCTTGGGCCCCTGTTCCGGGCCCCTTCACTCACTT
TATATTCCCTGGAAACCAAAGTGTGGGCGGAAAAAATCCCCCCCGTGGTG
TCCCCGAACTTTTTTTCTTCCCCG
NTTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAAGGCTAT
ACAGAGAAACCCTGGTCTTGAAAAACCAAAAAAAAAAAAAAAAAAAGAAT
TGAAAAGAATTGAAAATCAACCCAACTAAGAAACACACACACACACACAC
AGACGTGCAGGCTGGAAAGATGGTTCAGTGATTAAGAGTAAAGATTGCTC
TTCCAGAGATCCTAAGTTCTATGCTCAGCACCCATACAGCAGCTCACAAC
CATCTGTGACTCCTCTTCCAGGAGATCCAACATCTTCTTCTGGCCTCTGA
GGACACCAGTCACACAGACATATATGTGGGCAAAATATCTACCCACATAA
AATGAGTAAATAATTGTAAATAAGAATAATAAAATAGTTTCAGATTTCTG
AGCATTTGAGACTTCAGATGTGGGGAATAGGGGCATTCAACCTCTATGCT
ATTGTGGGCCATGTTTAAGGGGTCCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTTTCTCTGTGTCTCGCTCACTTATTATTTCTTTATCCTTTC
CTTCTTTTTCTCTCAACCTAATGTTTGCATGTCGGCTTTTTTTTTCCCTT
TTTCGTTCCATTTTTTCCCACAATTTTTTTTCGAGTTATCCCTATTTTCC
TTTTTTATCCTATATTAATTTTTTTGTTTCCCACTCTTATTTTCCTCTTT
TTACCTCCCCTTTTTTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_f24.b1 MSMg01no405_f24.b1 CHROMAT_FILE:
MSMg01no405_f24.b1 PHD_FILE: MSMg01no405_f24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:20 2005
         (443 letters)



>mm_chr9_118524699_118525543
          Length = 845

 Score =  804 bits (416), Expect = 0.0
 Identities = 437/448 (97%), Gaps = 8/448 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagaaaggaaatatataaaatgtaaggttcaaagaaaaaagccccgccaggaagatgaat 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 836 aagaaaggaaatatataaaatgtaaggttcaaagaaaaaagccccaccaggaagatgaat 777

                                                                       
Query: 61  gaagctaaatgttgcgatcaagtaagtatattaaatggtattaaatggcgacttatggat 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 gaagctaaatgttgtgatcaagtaagtatattaaatggtattaaatggcgacttatggat 717

                                                                       
Query: 121 ttgcagttgtacagaggagaactgtatcatgttaggcattattattacctggctatcgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 ttgcagttgtacagaggagaactgtatcatgttaggcattattattacctggctatcgtt 657

                                                                       
Query: 181 ttcacgtggacataaagagatacaagtatatgtcaaattgacatgaaaaaaaaaaaggct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 ttcacgtggacataaagagatacaagtatatgtcaaattgacatgaaaaaaaaaaaggct 597

                                                                       
Query: 241 aaggtatggctcagcctggggaagaacttgtctctcagaaagagatttcagtggtgacat 300
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 aaggtatggctcagccaggggaagaacttgtctctcagaaagagatttcagtggtgacat 537

                                                                       
Query: 301 cctgtggtgacatcctggggacccatcttcct-----gggggggaaaaatgataggcagg 355
           ||||||||||||||||||||||||||||||||     |||||||   |||||||||||||
Sbjct: 536 cctgtggtgacatcctggggacccatcttcctgggggggggggg---aatgataggcagg 480

                                                                       
Query: 356 aacataccttagccaggacctccttgacatgcatagctcggccctccatttaaacagtaa 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 aacataccttagccaggacctccttgacatgcatagctcggccctccatttaaacagtaa 420

                                       
Query: 416 cctcacttcaagacctgaagacagactt 443
           ||||||||||||||||||||||||||||
Sbjct: 419 cctcacttcaagacctgaagacagactt 392


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 845
Length adjustment: 10
Effective length of query: 433
Effective length of database: 835
Effective search space:   361555
Effective search space used:   361555
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)