BAC Information

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BAC

Clone NameMSMg01-405G15
Chromosome9 (Build37)
Map Location 105,308,705 - 105,308,948
singlet/doubletsinglet
Overlap genenone
Upstream geneCpne4, Mrpl3, Nudt16, 1700080E11Rik, Nek11, Aste1
Downstream geneAtp2c1, EG434434, LOC664981, Pik3r4, E330026B02Rik, EG665033, 1110001D15Rik, LOC669311, 6230410P16Rik, Wdr82, Ppm1m, Twf2, Tlr9, Alas1, Wdr51a, Dusp7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405G15.T7 (MSMg01no405_g15.b1)MSMg01-405G15.TJ (MSMg01no405_g15.g1)
ACCAG503851AG503852
length769762
length of high quality
(start - end)
244 (73 - 316)506 (77 - 582)
definitionCHROMAT_FILE: MSMg01no405_g15.b1 PHD_FILE: MSMg01no405_g15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:23 2005CHROMAT_FILE: MSMg01no405_g15.g1 PHD_FILE: MSMg01no405_g15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCTATATTTGCGGCGCTATACGACTCACTAATTCANAAACATCCGCGGA
ATCACCTTGGTTACCATATATAAGCTTTGTATTAAGAATCCAAATGTTCA
AGAGGTGCTATTTTAAAACTACTAATACCATCGGATTTATAATGGTGCTG
CCAGTTCTGAATCTCAGAGAAGCAAGAATGGGTAAGTGGGATGACCATAG
TGGGTCAAGTCTCAAAGTGTAGTCTAACTTGCACAGCTGTGGTCCTTCTA
CTGTTGAACCACTGGTATATTCCATCAGTCATTTCTATGACGGCTGAAAG
TTGCCAACTGTGAGCCAGTCCATTGTAGTTCTTAACAGTTAGCAATTTTC
TTGTTGTGGGTTGGTCTGGTACTGTGATATGTATTCAAATTGCTAAATTC
TACCCCAAAATCAGGTTGTCCCAAGTCTACTGACTTCTTATGTATAGCAG
TTTTTGTTGTGCAAATCTTGTTCCTCAATTACTGGAGGGAAGAGAGGTAG
GTGTGTTTTCAGTTACCAAGTACAAAGACCAGACTTGGCTGCTGCATACT
GAGACAGAAGTTACCCAGAGGTAAATCAGAGGAAGAGTCGCTATATGTGA
CCTTTTGGCCTGGCCTTTCTTTTCCTCCCAAATTCCTTTGTCTGACTGGC
CTTTTAATTTTTTTTTTTTTATTCACAAATTCCGTGTTACTAAGCCCCCA
CCAACTCTATAAACTCTGCATTGGGGTGGTTCTCCGTTTTTCTGACTCAT
TTTTCGTGTTTTTTTCTCG
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCACTTTGTGGCCATATGGTGTCA
GATGAATATGAGCAACTCTCTTCTGAAGCACTAGAGGCTGCCCGTATTTG
TGCCAACAAATACATGGTAAAGAGTTGCGGCAAGGATGGCTTTCATATCC
GAGTGAGGCTCCACCCTTTCCATGTCATCCGTATCAACAAGATGTTGTCC
TGTGCTGGGGCTAACAGGCTCCAGACAGGGATGCGTGGTGCCTTTGGGAA
GCCCCAGGGCACAGTGGCCAGGGTTCACATTGGCCAGGTCATCACGTCTA
TCCGAGCCAAGTTGCAGAATAAGGAACATGTGATTGAGGCTCTGCGAAGA
GCCAAGTTCAAGTTCCCTGGCCGCCAGAAGATCCACATCTCAAAGAAGTG
GGGCTTCACCAAGTTTAATGCAGATGAATTTGAAGACATGATTGCTGAGA
AGCGGCTCATTCCTGATGGCTGTGGTGTCAAATATATCCCCAATCGCGGT
TCTCTGGACAAGTGGAGAGCCCTGCATTCCTGAAGGCTTCAATAGTTCTC
TCCTATACCCTACCCAATCGTTCAATAATAAATTTCGCATCAAGCTCGCT
TACAAAAATACTAATTATGTGTAATACCCCCCCCAGGTGTTACTGGCTTT
TGAAGGCCTGAATTTCTTCTCGCTCAATTACCTGACGTTCTTTTTTCGTC
CCATCTCTTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_g15.b1 MSMg01no405_g15.b1 CHROMAT_FILE:
MSMg01no405_g15.b1 PHD_FILE: MSMg01no405_g15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:23 2005
         (244 letters)



>mm_chr9_105308505_105309148
          Length = 644

 Score =  472 bits (244), Expect = e-138
 Identities = 244/244 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agctttgtattaagaatccaaatgttcaagaggtgctattttaaaactactaataccatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agctttgtattaagaatccaaatgttcaagaggtgctattttaaaactactaataccatc 260

                                                                       
Query: 61  ggatttataatggtgctgccagttctgaatctcagagaagcaagaatgggtaagtgggat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggatttataatggtgctgccagttctgaatctcagagaagcaagaatgggtaagtgggat 320

                                                                       
Query: 121 gaccatagtgggtcaagtctcaaagtgtagtctaacttgcacagctgtggtccttctact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaccatagtgggtcaagtctcaaagtgtagtctaacttgcacagctgtggtccttctact 380

                                                                       
Query: 181 gttgaaccactggtatattccatcagtcatttctatgacggctgaaagttgccaactgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttgaaccactggtatattccatcagtcatttctatgacggctgaaagttgccaactgtg 440

               
Query: 241 agcc 244
           ||||
Sbjct: 441 agcc 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)