BAC Information

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BAC

Clone NameMSMg01-405K04
Chromosome9 (Build37)
Map Location 60,897,827 - 61,087,904
singlet/doubletdoublet
Overlap genenone
Upstream geneThsd4, LOC100039792, EG384942, Lrrc49, Larp6, LOC100040447, Uaca, ENSMUSG00000052143, A430102L10
Downstream geneLOC100040481, Tle3, LOC100039851, Rplp1, Kif23, Paqr5, Glce
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405K04.T7 (MSMg01no405_k04.b1)MSMg01-405K04.TJ (MSMg01no405_k04.g1)
ACCAG504020AG504021
length776783
length of high quality
(start - end)		386 (50 - 435)358 (78 - 435)
definitionCHROMAT_FILE: MSMg01no405_k04.b1 PHD_FILE: MSMg01no405_k04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:41 2005CHROMAT_FILE: MSMg01no405_k04.g1 PHD_FILE: MSMg01no405_k04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,087,523 - 61,087,904)(60,897,827 - 60,898,183)
sequence
NTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACTCCTTCACTTACCCACTCATTCTTTTCTCATTTATGAAT
TCATTCATTCTTTCCGCACTGAGCCCCTGCTGTGTTAGACACAGGGCTGA
TTCCTGACAATAGGGTAGTGAATCAGAGCAGAACCCCTTCCTACCTTACA
GTCTATGGAGGTCATGGGCACACCAGTAAATGTGTAACTCTAGCTCGGCT
GGCATCGTGAATGGCAGGTGTTTTATTTGCCAGCACAAGGGGACAGGGAT
GAGGCTGGCATAGTCAGGTAGGTCTAGGTCGGTCTCCTTGACGTTCAGAG
CATGGACTGGAGGATAAAGAAGGGTTGGCTGTAGGAAGGGTGAAGAAAGA
CTACTCTAGATTTAGGACCCAGCACATGCAAATGTTCTGGCCAGGGTAGA
AGAAACTAATCTGGCACTAGGGACCTGGGTCTTCTACTCCCAAGTAATGA
GAAATGACTGTTATCTTGTAAGGCCACGGCTGCCAATACGATCTGATCTG
CTTTATTCCCGCACCTTGGGTCATGCTACAGGTGGATAACACACCATCTC
TTCCCCTCCTGCACATCGTCTACCCCAATTACTCTCTCTGTCTTTTTCCC
CCTCTTCTACCTACTTTTTTTTTTTTTTTATCCACCACCTTGTACCTATA
TTATTTTACTTCTTCTACTTCTTCTTCTCTTTTCCTTTTCTCTGTTTCTT
CTATTTCCATTCTTTTTTTTCTCCTG

TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCTGTTTCTGCCTCCTGTCCCAC
TGCAAGCACACTGCAGTCAGGCATGCCCACTGCCCACTGCCGTGTCTGCT
TTTACTCCAGTTTGGGCTCTGAACTGAGATCCTCAGGGCGGCACAGCAAG
TGCTTGCCCAGGCTCACCGTCTCCCAGCCTGACTCAGTTTTCCACTGAGT
GTGCCTGGAGTGTTTTAAATGCAGCAAACGTGGCCACTTGTCAGGCACGT
GGGTTTTAGTGACTCTTGTCTTGTCTCATAGCTCTCTCACGTTCCCATGA
AGTCACCTCTGGTTTTACTTTGTAGCTTCTGGGACTATTGGATTAAAGTG
TTCCTCTACTTTGTTTCCTATATTTTGTGCCTTTAAAAAATTTACAATGT
GGCATTTTGTATGAACACATAATTGCGAGTATATTACATGTTGTCTTTTA
CCAGTATCACCGTTATCCCAAGAGACTATTGTTCTCTTTATTATCTTTGT
GCCCCTGCCCATTATTATTTTGTCTATTATTTATTCTGATATATTTGCCC
CCTTCATTCTTCCGCCTCTTCCCTTTTTTTCTTTCCTCCCTTTATTACTC
ATCTTTACCTCTCCACTTCTCGTCTTTCCTCTTTTTTACTCCTCCCTTTT
TTTCCAAAATCTATTTTTTCCTTCCCCTTCTTTTCCCCCTACATTCTGTT
CTTGCTTCCTCTCTGTTCTTGTCTTATTCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_k04.b1 MSMg01no405_k04.b1 CHROMAT_FILE:
MSMg01no405_k04.b1 PHD_FILE: MSMg01no405_k04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:41 2005
         (386 letters)



>mm_chr9_61087161_61087946
          Length = 786

 Score =  654 bits (338), Expect = 0.0
 Identities = 371/382 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactccttcacttacccactcattcttttctcatttatgaattcattcattcttt 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gaattcactccttcatttacccactcattcttttctcatttatgaattcattcattcttt 685

                                                                       
Query: 65  ccgcactgagcccctgctgtgttagacacagggctgattcctgacaatagggtagtgaat 124
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cctcactgagcccctgctgtgttagacacagggctgattcctgacaatagggtagtgaat 625

                                                                       
Query: 125 cagagcagaaccccttcctaccttacagtctatggaggtcatgggcacaccagtaaatgt 184
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 624 cagagcagaaccccttcctaccttacagtctatggacgtcatgggcacaccagtaaatgt 565

                                                                       
Query: 185 gtaactctagctcggctggcatcgtgaatggcaggtgttttatttgccagcacaagggga 244
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gtaactctagctcgactggcatcgtgaatggcaggtgttttatttgccagcacaagggga 505

                                                                       
Query: 245 cagggatgaggctggcatagtcaggtaggtctaggtcggtctccttgacgttcagagcat 304
           ||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 504 cagggatgaggctggtatagtcaggtaggtcaaggtaggtctccttgacgttcagagcat 445

                                                                       
Query: 305 ggactggaggataaagaagggttggctgtaggaagggtgaagaaagactactctagattt 364
           |||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 444 ggactggaggatgaagaagggttgactgtaggaagggagaagaaagactactctagattt 385

                                 
Query: 365 aggacccagcacatgcaaatgt 386
            |||||||||||||||||||||
Sbjct: 384 gggacccagcacatgcaaatgt 363


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 786
Length adjustment: 9
Effective length of query: 377
Effective length of database: 777
Effective search space:   292929
Effective search space used:   292929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no405_k04.g1 MSMg01no405_k04.g1 CHROMAT_FILE:
MSMg01no405_k04.g1 PHD_FILE: MSMg01no405_k04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:41 2005
         (358 letters)



>mm_chr9_60897627_60898384
          Length = 758

 Score =  667 bits (345), Expect = 0.0
 Identities = 354/357 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctgtttctgcctcctgtcccactgcaagcacactgcagtcaggcatgcccactgcccac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctgtttctgcctcctgtcccactgcaagcacactgcagtcaggcatgcccactgcccac 260

                                                                       
Query: 61  tgccgtgtctgcttttactccagtttgggctctgaactgagatcctcagggcggcacagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgccgtgtctgcttttactccagtttgggctctgaactgagatcctcagggcggcacagc 320

                                                                       
Query: 121 aagtgcttgcccaggctcaccgtctcccagcctgactcagttttccactgagtgtgcctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagtgcttgcccaggctcaccgtctcccagcctgactcagttttccactgagtgtgcctg 380

                                                                       
Query: 181 gagtgttttaaatgcagcaaacgtggccacttgtcaggcacgtgggttttagtgactctt 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagtgctttaaatgcagcaaacgtggccacttgtcaggcacgtgggttttagtgactctt 440

                                                                       
Query: 241 gtcttgtctcatagctctctcacgttcccatgaagtcacctctggttttactttgtagct 300
           |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtcttgtcacagagctctctcacgttcccatgaagtcacctctggttttactttgtagct 500

                                                                    
Query: 301 tctgggactattggattaaagtgttcctctactttgtttcctatattttgtgccttt 357
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctgggactattggattaaagtgttcctctactttgtttcctatattttgtgccttt 557


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 758
Length adjustment: 9
Effective length of query: 349
Effective length of database: 749
Effective search space:   261401
Effective search space used:   261401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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