BAC Information

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BAC

Clone NameMSMg01-405K22
Chromosome9 (Build37)
Map Location 61,524,507 - 61,723,699
singlet/doubletdoublet
Overlap genenone
Upstream geneLrrc49, Larp6, LOC100040447, Uaca, ENSMUSG00000052143, A430102L10, LOC100040481, Tle3, LOC100039851
Downstream geneRplp1, Kif23, Paqr5, Glce, Spesp1, LOC100039897, Anp32a, Coro2b, Itga11, EG665478, Fem1b, Cln6, Calml4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405K22.T7 (MSMg01no405_k22.b1)MSMg01-405K22.TJ (MSMg01no405_k22.g1)
ACCAG504056AG504057
length769790
length of high quality
(start - end)		426 (49 - 474)285 (76 - 360)
definitionCHROMAT_FILE: MSMg01no405_k22.b1 PHD_FILE: MSMg01no405_k22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:44 2005CHROMAT_FILE: MSMg01no405_k22.g1 PHD_FILE: MSMg01no405_k22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,723,278 - 61,723,699)(61,524,507 - 61,524,786)
sequence
NNNTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAAGGCCCCTCCTAGTACCATCTGCCCCTTAATGCTGTCCTGT
GGATGTCCCCAGGGCGCTGTGGGCTCAGTCTTTCATCTTGCAGAGGAAAA
CAGCCCAAAGAAAGAAGGGTCCTTTGGAGGTACATGGTGTCCTTAGCTGC
ACTAGGGCCAGGCTCAGGGCTCTGCCTGTTCCCAGGCCTCTCTGCTTCCC
CCAACAACAGTGCTTCTGGGCTGCAATGGCCACAGGGCTCATTATAGATG
CTACAAATTGAAAGAAATAGCTGCTCAGTTACAAATTAATAACAGATTTG
TTTGTCATTAAGGCAGCACTATTTAATAAAATTAGTTCAGTGGAGCATAA
TTACTTTCATATAAAATTCCCCCTTAAAAATTACTTTGATAAATCCAAGC
CTATTAGGCGGGTGTAGAGACTCTGGGGGGGTGGGGGTNGGTCTGAGNTT
TGGTTGGGTATNTGTTGGGNNNNNTTTAGGTTTGGGGTTNGGTTCTGGGG
NTTTTTTTTTTTTGGNTTGGNNNNTGTGTGGTTTTTTGGTTGTTTTGTTT
GTTTTTTTTTTGTGTGTTGTTTGNGGTTTGTGGNNTTTGGGTGTTTTGTT
TTTTGGNNTTTTTTTGTTTTGTTTTTTTGTTTTTGGTGTGGTTTTTTTTG
TTGTTGTTTGNTTTTNTTTTTTTTTTGNGNTTTTGTTGTTTTTTTTTTTT
TTTTNTNTTTTTTTTTTTT

NCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGATCCACCAACTAGAGAGGCCTC
AGCCTGTCCCATCTTCCTGGGTCCTGTGACACTCGGGCACAGTTCCTCCA
ATGGCTCCCCCAAGGTGTGACTCCAACACATCGCTTCTTTGGTTAGAAGG
TTGGTGTTTCCTAGCAAGGGACTACAAAGCCATATTACACTCACTGCTAA
GTAAACAAATGCTTGAGGCTGTGTTTTACTGGTTCCATACCATCTGCCAT
CTGGTTTGGGGGAGCAAGGAAAGCTGTGGTTTTGTTGGGTTTGTGTATAT
GTGTGTGNTNNNNNNNNNNNNNNNTNTNNNNTNNNNNNNNNNNTTTTNNN
NNTTTTTTTTTTTTTTNNNTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTNNTTTNNTTNTTTNTNNNTTTTTTTTT
TTTTTTTTNTTTTTTTNNNTTTNNTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTNTTTNTTTTTTTTTTTTTTTTTTTTTTTTTNT
TTTTTTTTTTNTTTTTTTTTTTTNNNNNTTTTTTTTTNTTTTTTTTTTNT
TTTTTTTTTTNTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
NTTTTTTTTTTTTTTTNTTTTTTTNTNTTTTTTTTTTTTTNTTTNNTTTT
TTNNTNTTTTTTTTTTTTTNTTNTTTTTTTTTNTNTTNTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_k22.b1 MSMg01no405_k22.b1 CHROMAT_FILE:
MSMg01no405_k22.b1 PHD_FILE: MSMg01no405_k22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:44 2005
         (426 letters)



>mm_chr9_61723074_61723899
          Length = 826

 Score =  808 bits (418), Expect = 0.0
 Identities = 421/422 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaggcccctcctagtaccatctgccccttaatgctgtcctgtggatgtccccag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gaattcaaggcccctcctagtaccatctgccccttaatgctgtcctgtggatgtccccag 567

                                                                       
Query: 65  ggcgctgtgggctcagtctttcatcttgcagaggaaaacagcccaaagaaagaagggtcc 124
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ggcgctgcgggctcagtctttcatcttgcagaggaaaacagcccaaagaaagaagggtcc 507

                                                                       
Query: 125 tttggaggtacatggtgtccttagctgcactagggccaggctcagggctctgcctgttcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tttggaggtacatggtgtccttagctgcactagggccaggctcagggctctgcctgttcc 447

                                                                       
Query: 185 caggcctctctgcttcccccaacaacagtgcttctgggctgcaatggccacagggctcat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 caggcctctctgcttcccccaacaacagtgcttctgggctgcaatggccacagggctcat 387

                                                                       
Query: 245 tatagatgctacaaattgaaagaaatagctgctcagttacaaattaataacagatttgtt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tatagatgctacaaattgaaagaaatagctgctcagttacaaattaataacagatttgtt 327

                                                                       
Query: 305 tgtcattaaggcagcactatttaataaaattagttcagtggagcataattactttcatat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tgtcattaaggcagcactatttaataaaattagttcagtggagcataattactttcatat 267

                                                                       
Query: 365 aaaattcccccttaaaaattactttgataaatccaagcctattaggcgggtgtagagact 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aaaattcccccttaaaaattactttgataaatccaagcctattaggcgggtgtagagact 207

             
Query: 425 ct 426
           ||
Sbjct: 206 ct 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space:   340689
Effective search space used:   340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no405_k22.g1 MSMg01no405_k22.g1 CHROMAT_FILE:
MSMg01no405_k22.g1 PHD_FILE: MSMg01no405_k22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:44 2005
         (285 letters)



>mm_chr9_61524305_61524989
          Length = 685

 Score =  495 bits (256), Expect = e-144
 Identities = 274/280 (97%)
 Strand = Plus / Plus

                                                                       
Query: 3   gatccaccaactagagaggcctcagcctgtcccatcttcctgggtcctgtgacactcggg 62
           ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 203 gatccaccaaccagagaggcctcagcctgtcccatcttcctgggtcctgtgacacttggg 262

                                                                       
Query: 63  cacagttcctccaatggctcccccaaggtgtgactccaacacatcgcttctttggttaga 122
           ||||||||||||||  ||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct: 263 cacagttcctccaacagctcctccaaggtgtcactccaacacatcgcttctttggttaga 322

                                                                       
Query: 123 aggttggtgtttcctagcaagggactacaaagccatattacactcactgctaagtaaaca 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aggttggtgtttcctagcaagggactacaaagccatattacactcactgctaagtaaaca 382

                                                                       
Query: 183 aatgcttgaggctgtgttttactggttccataccatctgccatctggtttgggggagcaa 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aatgcttgaggctgtgttttactggttccataccatctgccatctggtttgggggagcaa 442

                                                   
Query: 243 ggaaagctgtggttttgttgggtttgtgtatatgtgtgtg 282
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ggaaagctgtggttttgttgggtttgtgtatatgtgtgtg 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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