Query= MSMg01no405_l03.b1 MSMg01no405_l03.b1 CHROMAT_FILE:
MSMg01no405_l03.b1 PHD_FILE: MSMg01no405_l03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:45 2005
(529 letters)
>mm_chr9_9897064_9897992
Length = 929
Score = 818 bits (423), Expect = 0.0
Identities = 456/467 (97%), Gaps = 1/467 (0%)
Strand = Plus / Minus
Query: 23 tcacatacagacaataaaagataataacagtaaatcctttaaaacactgtatgttactca 82
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 467 tcacatacagacaataagagatagtaacagtaaatcctttaaaacactgtatgttactca 408
Query: 83 ggtgtgctaaggaatactacacacctagttcatattatctatgagtgattccatcttggc 142
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 407 ggtgtgctaaggaatactacacacctagttgatattatctatgagtgattccatcttttc 348
Query: 143 cttgaatttttctcaaggaatttgaagatgttatctttatgttttcttaacaacagtaag 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 cttgaatttttctcaaggaatttgaagatgttatctttatgttttcttaacaacagtaag 288
Query: 203 taggcaacacccatccttattattagcaagcaataatatgttaataacgttctgattatg 262
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 287 taggcaacacccatccttattattagcaagcaataatatgctaataacgttctgattatg 228
Query: 263 ggagcaaaaaaataaaataaaataatcccctctagatgctggtctctgagtctttcttct 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 ggagcaaaaaaataaaataaaataatcccctctagatgctggtctctgagtctttcttct 168
Query: 323 ggccagatctagccattgttaaagacaaacacaatacagggaaaaaccaaaaagcactgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 ggccagatctagccattgttaaagacaaacacaatacagggaaaaaccaaaaagcactgg 108
Query: 383 ggaaaacctatttattgcaaggaaggggagtagatccctctgcctcctcaaacagact-c 441
||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||| |
Sbjct: 107 ggaaaacctatttattgcaaggaaggggagtagatccctttgcctccacaatcagacttc 48
Query: 442 aaagactctacctgtgtactctctatcttagacagaataggtttgga 488
||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 47 aaagactctacctgtgtactctctatcttggacagaataggtttgga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space: 476961
Effective search space used: 476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no405_l03.g1 MSMg01no405_l03.g1 CHROMAT_FILE:
MSMg01no405_l03.g1 PHD_FILE: MSMg01no405_l03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:45 2005
(584 letters)
>mm_chr9_9715284_9716267
Length = 984
Score = 1114 bits (576), Expect = 0.0
Identities = 582/584 (99%)
Strand = Plus / Plus
Query: 1 tcttctttgaaaaaaagtcactaagaactcatatttccatgcaaagtctcagcatgggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttctttgaaaaaaagtcactaagaactcatatttccatgcaaagtctcagcatgggaa 260
Query: 61 gatctctctgttttgttctgtccttgaaatgaagggctgatcagagcctttgggcaagag 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatctttctgttttgttctgtccttgaaatgaagggctgatcagagcctttgggcaagag 320
Query: 121 ctgtctaatgagctattagttccaaagtgagtctctcttgaacccaactgaaatataagg 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 ctgtctaatgagctattagttccaaagtgagtctctcttgaaccccactgaaatataagg 380
Query: 181 tgtagaattgagtaaaagaactataaagttgaatgccttgaaaatctgaaaggagcactg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtagaattgagtaaaagaactataaagttgaatgccttgaaaatctgaaaggagcactg 440
Query: 241 tatagcccagtcatggtttagtttttagaaaacattttagtttttcataaattttaactt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatagcccagtcatggtttagtttttagaaaacattttagtttttcataaattttaactt 500
Query: 301 tctgagtaaaaatatgtttaaaaagcaacaggtattgcttctagtaatgaggctagagac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctgagtaaaaatatgtttaaaaagcaacaggtattgcttctagtaatgaggctagagac 560
Query: 361 atggcttggcactctcatggcaaactcccaaatatagtaaattcaggtgctggaaatcta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atggcttggcactctcatggcaaactcccaaatatagtaaattcaggtgctggaaatcta 620
Query: 421 ttgtcctcttctggcctccccaagcactagacagaaaagtggatcacagatatgcatgta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgtcctcttctggcctccccaagcactagacagaaaagtggatcacagatatgcatgta 680
Query: 481 aaattaaataaacataaaggggactagttctacctcagcccagctataccattcctggtt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaattaaataaacataaaggggactagttctacctcagcccagctataccattcctggtt 740
Query: 541 gtatacccaaaagatgctccattatatgggaatgttaatagcac 584
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtatacccaaaagatgctccattatatgggaatgttaatagcac 784
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space: 559076
Effective search space used: 559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
