Query= MSMg01no405_n03.b1 MSMg01no405_n03.b1 CHROMAT_FILE:
MSMg01no405_n03.b1 PHD_FILE: MSMg01no405_n03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:55 2005
(244 letters)
>mm_chr9_68097685_68098328
Length = 644
Score = 456 bits (236), Expect = e-133
Identities = 242/244 (99%)
Strand = Plus / Minus
Query: 1 cccagacggcggtcggaaacctgactgcacctgccgcatctcccttcagatcacgttgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cccagacggcggtcggaaacctgactgcacctgccgcatctcccttcagatcacgttgct 385
Query: 61 gttatgaaaaatagtttgctattttggaaccccctggcagccagagtgaatcgccgaggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gttatgaaaaatagtttgctattttggaaccccctggcagccagagtgaatcgccgaggg 325
Query: 121 ccccaagctcgtttatcttgtgtcagaagcaaagccaaatgaacgccacctcgcccggca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ccccaagctcgtttatcttgtgtcagaagcaaagccaaatgaacgccacctcgcccggca 265
Query: 181 cctgaagaatggaaaggcgctgggtgagagtaaaaataaccaagggctggggaaatgatg 240
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cctgaagaatgggaaggcgcttggtgagagtaaaaataaccaagggctggggaaatgatg 205
Query: 241 cgga 244
||||
Sbjct: 204 cgga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no405_n03.g1 MSMg01no405_n03.g1 CHROMAT_FILE:
MSMg01no405_n03.g1 PHD_FILE: MSMg01no405_n03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:55 2005
(360 letters)
>mm_chr9_67930734_67931492
Length = 759
Score = 530 bits (274), Expect = e-155
Identities = 326/360 (90%), Gaps = 28/360 (7%)
Strand = Plus / Plus
Query: 1 agagtaaaactcagccactgtgggtacaggaaatgaggatttttttttccttacagggaa 60
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 201 agagtaaaactcagccactgtgggtacaggaaatgagga-ttttttttccttgcagggaa 259
Query: 61 cactgtgtttattgttatggatgccttggttgaaggcaaaagatttgttttgttgtatat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 260 cactgtgtttattgttatggatgccttggttgaaggcaaaagatttgttttgttgtagat 319
Query: 121 ggagtaaagaattttacttaatgggaacaataggcagagcatttgccacaggctgcctgt 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 320 ggagtaaagaattttacttaatgggaacaataggcagagcattcgccacaggctgcctgt 379
Query: 181 ggctttaggttccttgtggtttgatgtctggctggtgagagcgaagggcatcaggagcca 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 380 ggctttaggttccttgtggtttgatgtctggctggggagagcgaagggcatcaggagcca 439
Query: 241 gcctatgtgagagagaatcaggagccagcctgggctaggcagaatcaggagccagcctgg 300
||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 440 gcctaggtgagagagaatcaggagccagcctgggctaggcagaat------------tgg 487
Query: 301 gctaggcagaatcggagaaagggccagtcaacctctgtcaagtactgtctggcatgacag 360
||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 488 ---------------agaaagggccagtcaacctctgtcaagcactgtctggcatgacag 532
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 759
Length adjustment: 9
Effective length of query: 351
Effective length of database: 750
Effective search space: 263250
Effective search space used: 263250
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
