Query= MSMg01no407_b08.b1 MSMg01no407_b08.b1 CHROMAT_FILE:
MSMg01no407_b08.b1 PHD_FILE: MSMg01no407_b08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:37 2005
(539 letters)
>mm_chr9_92073940_92074877
Length = 938
Score = 1019 bits (527), Expect = 0.0
Identities = 533/535 (99%), Gaps = 1/535 (0%)
Strand = Plus / Plus
Query: 5 gaattcacagactgaaccccctgcttctgattaactagccagagtatattagattgtcta 64
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacagactgaacccc-tgcttctgattaactagccagagtatattagattgtcta 263
Query: 65 taatatgctttttttaattggcttaaaatctttcatggatgaaaagtgtgaataaaactt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 taatatgctttttttaattggcttaaaatctttcatggatgaaaagtgtgaataaaactt 323
Query: 125 aaaattaaaatcttttacgatggggcttagtgtaaataaaatgaatatttttgatgtctt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaaattaaaatcttttacgatggggcttagtgtaaataaaatgaatatttttgatgtctt 383
Query: 185 catattgtttggtgaaatttggtaggcaaaatgaatcgacaaatttaaaacacagtcaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 catattgtttggtgaaatttggtaggcaaaatgaatcgacaaatttaaaacacagtcaaa 443
Query: 245 gataatactgagaagtctatagccatgaggctatttccttagctatttgaatatatgtag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gataatactgagaagtctatagccatgaggctatttccttagctatttgaatatatgtag 503
Query: 305 ccatataattttatttgcttatttgctacttggcttccttttcaaagacttagcttctga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ccatataattttatttgcttatttgctacttggcttccttttcaaagacttagcttctga 563
Query: 365 tagtcactgtaaaaataatactatttccaaataactgcctaaattactgcacagaagatc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tagtcactgtaaaaataatactatttccaaataactgcctaaattactgcacagaagatc 623
Query: 425 cttgaatgatgatgaaaacaccttacactcaaaatgcattttctaggctaccaaaaaagt 484
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 624 cttgaatgatgatgaaaacaccttacattcaaaatgcattttctaggctaccaaaaaagt 683
Query: 485 aataacatggcatatttcagagtatccatggctggcaaggagctgctgaaagatg 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aataacatggcatatttcagagtatccatggctggcaaggagctgctgaaagatg 738
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 938
Length adjustment: 10
Effective length of query: 529
Effective length of database: 928
Effective search space: 490912
Effective search space used: 490912
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no407_b08.g1 MSMg01no407_b08.g1 CHROMAT_FILE:
MSMg01no407_b08.g1 PHD_FILE: MSMg01no407_b08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:38 2005
(471 letters)
>mm_chr9_92224254_92225124
Length = 871
Score = 876 bits (453), Expect = 0.0
Identities = 463/471 (98%), Gaps = 8/471 (1%)
Strand = Plus / Minus
Query: 1 attaactctgtccatagagaaggacaggtgtgagcactcttccccttttctctatttatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 attaactctgtccatagagaaggacaggtgtgagcactcttccccttttctctatttatt 518
Query: 61 agtttatctttgttatagttggttgtgtggtttagaattcagtggtggtaaaatgaactg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 agtttatctttgttatagttggttgtgtggtttagaattcagtggtggtaaaatgaactg 458
Query: 121 actttaatcaagtcatgaaagtcaaacttagatcttttcaaattgcctttttcagctaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 actttaatcaagtcatgaaagtcaaacttagatcttttcaaattgcctttttcagctaag 398
Query: 181 taacctccttaacaattttgagtacacgtttacacaaatcctaattaaggtccggtcatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 taacctccttaacaattttgagtacacgtttacacaaatcctaattaaggtccggtcatg 338
Query: 241 tcaatcatttcaggatctattcactgttattcagaaccaaatgacagttataaaaatact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tcaatcatttcaggatctattcactgttattcagaaccaaatgacagttataaaaatact 278
Query: 301 cctcagcactaagtaacacatatttctgtaggcttcattttatttaaacccagggaatag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 cctcagcactaagtaacacatatttctgtaggcttcattttatttaaacccagggaatag 218
Query: 361 atgtaaataataaatcaacagacatgcacacacatacaaacacacacacacacacacaca 420
||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 217 atgtaaataataaatcaacagacatgcacacacatacaa--------acacacacacaca 166
Query: 421 cacacacacataatatttttttctgggaagcacatcaaagttggcttccag 471
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 cacacacacataatatttttttctgggaagcacatcaaagttggcttccag 115
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space: 396921
Effective search space used: 396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
