Query= MSMg01no407_i08.b1 MSMg01no407_i08.b1 CHROMAT_FILE:
MSMg01no407_i08.b1 PHD_FILE: MSMg01no407_i08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:11 2005
(612 letters)
>mm_chr9_10288908_10289920
Length = 1013
Score = 1048 bits (542), Expect = 0.0
Identities = 589/608 (96%), Gaps = 6/608 (0%)
Strand = Plus / Plus
Query: 5 gaattctaattctcatgcttgcacacttaacactctttatgttgaataaattttctatca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaattctcatgcttgcacacttaacactctttatgttgaataaattttctatca 264
Query: 65 taaatattatatttatgtatgaaatatatttgaaaatatccatgttttggaataagtttg 124
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 265 taaatattatatttatgtatgaaatatatttcaaaatatccatgttttggaataagtttg 324
Query: 125 agttctaaaatcatttgcttttattttgcaggagtggatttttttttttttttttttttt 184
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 325 agttctaaaatcatttgcttttattttgcaggagtggaatttttttttttttttt----- 379
Query: 185 tgagacagggtttctctgtgtagccctggctgacctggaattcactttgtagagcaagct 244
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 380 -gagacagggtttctctgtgtagccctggctgtcctggaattcactttgtagagcaagct 438
Query: 245 ggcctggaactcagaaatttgcctgcctctgcctcctaagtgctgggattaaaggcatgc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ggcctggaactcagaaatttgcctgcctctgcctcctaagtgctgggattaaaggcatgc 498
Query: 305 accaccacgcccagcaggagtggaattcttaatttatatagtctattgaaaaccatacag 364
||||||||||| ||| ||||||||||||||||||||||| ||||||||||| | |||||
Sbjct: 499 gccaccacgcccggcaagagtggaattcttaatttatataatctattgaaaatcgtacag 558
Query: 365 ctacagcaacattctacccatcacattaaaaagtaaatgtattgaagacctcttttgaaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ctacagcaacattctacccatcacattaaaaagtaaatgtattgaagacctcttttgaaa 618
Query: 425 actcatctctaggacatgatatctgagtaaaaactctgctgctgtcatctcccttcaaga 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 actcatctctaggacatgatatctgagtaaaaactctgctgctgtcatctcccttcaaga 678
Query: 485 ttttatttccgtaggaatctgacttgaagtgtttcagcatttaatgattttcacatatgt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 679 ttttatttccgtaggaatctgacttgaagtgtttcagcatttaatgattttcatatgtgt 738
Query: 545 gctgttttttctgagtacccgggcttctattgtaatgtaatgggcttcatatgcattttc 604
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 gctgttttttctgagcacctgggcttctattgtaatgtaatgggcttcatatgcattttc 798
Query: 605 ctgactcc 612
||||||||
Sbjct: 799 ctgactcc 806
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1013
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1003
Effective search space: 603806
Effective search space used: 603806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no407_i08.g1 MSMg01no407_i08.g1 CHROMAT_FILE:
MSMg01no407_i08.g1 PHD_FILE: MSMg01no407_i08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:11 2005
(501 letters)
>mm_chr9_10448838_10449738
Length = 901
Score = 629 bits (325), Expect = 0.0
Identities = 371/403 (92%), Gaps = 28/403 (6%)
Strand = Plus / Minus
Query: 1 agaacttttgtctgaatcttttacaggggtcccataaagaaaattatttctctggccata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 agaacttttgtctgaatcttttacaggggtcccataaagaaaattatttctctggccata 344
Query: 61 ccgactcaggacagcacacaaaagcacagtcaggtcttattattctatgtctgtgtgctg 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 343 ccgactcaggacagcacacaaaagcacagtcgggtcttattattctatgtctgtgtgctg 284
Query: 121 caaaaaaggccagaaggagttatttctttattgccttactgcttccaatcaatgatctaa 180
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 283 caaaaaaggccagaaggagttatttctttaatgccttactgcttccaatcaatggtctaa 224
Query: 181 gaaatggtcaccacctggttcccctctcttctgtctctttctgtctttctctgtctctgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 gaaatggtcaccacctggttcccctctcttctgtctctttctgtctttctctgtctctgt 164
Query: 241 ctct------------ctct--ctctgt--------------ttcacacacacacacaca 272
|||| |||| |||||| ||||||||||||||||||
Sbjct: 163 ctctttttctatttgtctctgtctctgtctctctctctctctttcacacacacacacaca 104
Query: 273 cacacacacacacacacacgaaaagatcacatgaaagggtcacaaagtagaaatagggaa 332
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 103 cacacacacacacacacacgaaaagatcacatgaaagggtcacagagtagaaatagggaa 44
Query: 333 catggtacaatgaggttgtgtattcagctgagattgtaggagt 375
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43 catggtacaatgaggttgtgtattcagctgagattgtaggagt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space: 437481
Effective search space used: 437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
