NCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCACAATGCCTGTAGAAAGTTGGAGGAGTCTCCTATAGAGAGATG
TAGTAGATAATTGAATAAATAAAGATGTAGGTAGACTTATTAGTCACATC
TCCCTCTTCCTACTCCAGTGGCACAGAAGGTAAAATGAATAAATGCACAA
TTGTATTGCTCCTGACCAGATCCATGAATAATGTCAGATTAAATAAAAAG
ACAGGTTAAAAAATAAGTGTGGCCAAAATGGGGTCAGCAAATGCATTTTA
AACAGATCTGATACTTTGAAAGAAGGCTAGAAAAAGAAAACAAACAAAAT
TCTAAAAGGAAAAACAGTTCAGAATATTTCTCCTTTTTTTTTTGTTCATT
TGTTTTTTTTTTTTGTTTTTGGCTTATTTTTTTTATTATTAGATATTGTC
TTTATTTACATTTCAAATGCTATCCCAAAAGTTCTCTGTAGCCTCCCCCT
ATCCACCCACTCCCACTTCTTGGCCCTGGTGGTCCTCTATACTGGGGCAT
AAAAAGTTTGCAAGACCAAAGGGCATCTCTTCTTAATGATGGCTGACTAG
GCCATCTTCTGCTAGGGACACGAGCTCTGGGGGTACTGACTAGNTCATAT
TGTTGGTCCCCTTCATCTCCTTGGGAACTTTGCATAGCTCCTAACTTGGG
GGGGCCGTGGTCCTTTCTTTCTATCCCAAATTAAAAAATTAAAAAAGGC

AATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAGACTTTTGCCAT
TAAGGGGTGTTGAATTTTTTCAAATGTTTTCTAAGCATCAAATGAAATGA
TCATGGAGTTTTGTTTGTTTTTTTTTCTTTGACTTTGTTTATAGAGTGGA
TTACATTGATTATATTAAACCATCCCAGCATCCCTGGGTTGAAGCCTACT
TGATCATGGGGAATGCTCATTTTGATGTATTCTTGGATTCAGTTTGTGAG
AATTTTATTGAGTATTTTTTTATCAATATTCATAAGGGAAATTGGTCTGA
AGTTCTCTTTTTTATTGGATCATTGTGTGGTTTAGGTATAAGGGTAATTG
TGACTCCATAGAACAAACTATGTAGTGTTCCTTCTGTTTCTATTTTGTGA
ATTAGATTGAATAATATTTGTATGACATCTTCTCTGAATTTTTGATAGAA
TTATTCTCTAACACCCATCTGGCCCTGTGATTTTTTCTTCTGGGAGAATT
TTTACGATTGACTCCTTTTCCTTAATGCTTAATGTGGACCGCATCAGAAT
GTTTTTATTAATTTTTCCTTGTTTTCACCCATCTTATTCCCCCTATTTCC
AATTTCTTTTTTTTCTTCTCTCCACTTTTTATTTTCTGCTATTCCCCGTT
TTTCCCCGATTTTCTCACTACTTTCTTATCCTCTTATCGATGACCCCCCT
TCGTCCATACACCTTTTACTTTTTTTCCTC

Query= MSMg01no407_j14.b1 MSMg01no407_j14.b1 CHROMAT_FILE:
MSMg01no407_j14.b1 PHD_FILE: MSMg01no407_j14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:17 2005
         (514 letters)



>mm_chr9_4935944_4936859
          Length = 916

 Score =  911 bits (471), Expect = 0.0
 Identities = 501/513 (97%), Gaps = 6/513 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccacaatgcctgtagaaagttggaggagtctcctatagagagatgtagtagataa 64
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccacaaggcctgtagaaagttggaggagtctcctatagagagatgtagtagataa 264

                                                                       
Query: 65  ttgaataaataaagatgtaggtagacttattagtcacatctccctcttcctactccagtg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttgaataaataaagatgtaggtagacttattagtcacatctccctcttcctactccagtg 324

                                                                       
Query: 125 gcacagaaggtaaaatgaataaatgcacaattgtattgctcctgaccagatccatgaata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcacagaaggtaaaatgaataaatgcacaattgtattgctcctgaccagatccatgaata 384

                                                                       
Query: 185 atgtcagattaaataaaaagacaggttaaaaaataagtgtggccaaaatggggtcagcaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atgtcagattaaataaaaagacaggttaaaaaataagtgtggccaaaatggggtcagcaa 444

                                                                       
Query: 245 atgcattttaaacagatctgatactttgaaagaaggctagaaaaagaaaacaaacaaaat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atgcattttaaacagatctgatactttgaaagaaggctagaaaaagaaaacaaacaaaat 504

                                                                       
Query: 305 tctaaaaggaaaaaca--gttcagaatatttctcctttttttttt-gttcatttgttttt 361
           ||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||| |
Sbjct: 505 tctaaaaggaaaaacatagttcagaatatttctcctttttttttttgttcatttgtttgt 564

                                                                       
Query: 362 tttttttgtttttggcttattttttttattattagatattgtctttatttacatttcaaa 421
           | ||   ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 565 tatt---gtttttggcttatttttattattattagatattgtctttatttacatttcaaa 621

                                                                       
Query: 422 tgctatcccaaaagttctctgtagcctccccctatccacccactcccacttcttggccct 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tgctatcccaaaagttctctgtagcctccccctatccacccactcccacttcttggccct 681

                                            
Query: 482 ggtggtcctctatactggggcataaaaagtttg 514
           |||||||| || |||||||||||||||||||||
Sbjct: 682 ggtggtcccctgtactggggcataaaaagtttg 714


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 916
Length adjustment: 10
Effective length of query: 504
Effective length of database: 906
Effective search space:   456624
Effective search space used:   456624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)