BAC Information

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BAC

Clone NameMSMg01-408C17
Chromosome9 (Build37)
Map Location 52,003,498 - 52,164,839
singlet/doubletdoublet
Overlap genenone
Upstream genePou2af1, Gm684, 1810046K07Rik, LOC100042854, LOC640374, LOC668070, Arhgap20, LOC629554, LOC100043409, Fdx1, EG629557, Rdx, 9830163H01Rik, Zc3h12c
Downstream geneLOC100042876, AI593442, Gm1715, Ddx10, Exph5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-408C17.T7 (MSMg01no408_c17.b1)MSMg01-408C17.TJ (MSMg01no408_c17.g1)
ACCAG505950AG505951
length777786
length of high quality
(start - end)		484 (63 - 546)262 (70 - 331)
definitionCHROMAT_FILE: MSMg01no408_c17.b1 PHD_FILE: MSMg01no408_c17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:04 2005CHROMAT_FILE: MSMg01no408_c17.g1 PHD_FILE: MSMg01no408_c17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,164,356 - 52,164,839)(52,003,498 - 52,003,759)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACCAGGGCTCCCTGTGACCAAAGTTCTCAGCCAGACAGCCCTCAAGAGTT
CAAATGGTCTTGTTCATATCCTGAAAGAAAACATATTTACATCATGGGGT
GAAGGGGGAAAAGGAAGTTAATGTCAAACAATTATGGTTTGTAGTGTGGA
CTACGGGAAGACTCTGAAAACAGATAGTGCTGATGGCTATAAACTGTGTT
TTAGTAAACTTTAACGGTACACGGAAGTTGGCTTAAATGATGGATTTTAC
CACAAACTAAAAACCATACTTACTAAATTATAATTTTGACAGTGAACTAT
TGTAAAACAACAAATGAGAAGGTGGCTAAGAAATGCCAGTTGTGCTCTTT
CCTGTCTCTCTTTAACTGAAGACGGTGGAGGCTTTTGAACACAGTAGCAT
TCAGATCAGGGCTTCTAAGAATCACCTCCCGTTAGTCCTGTGACATTAAG
ACAGTTACACAATTACTCCAGCACTCAATTTCCCCATCTACGGTAAGACA
GGTTAAGTGCAATCTGTAATTCATCTTCTGCTCCTATTTCTTCCAATTCC
TANGACGGGCAACTCCTAAACGAGGCGATCCCCCGCACTGCCTGCTACTG
CGAATGTGAACGCAACCCTTCCAATTAACACTAAAAATAAGGCCCGGCCG
GGTTAATGGTGGGGAAAACCCCTGAATTATTTTCCGGAACCCACTCGTGA
AAAGGTTGAAAAAACCTCCCTGAAAAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATAGCCACTATGCCTCAAGATCTCCATGCCA
AAATCAAGGTCAGAAACTTGTATCTCCCAGCCTCCAGATTAGGATCACTG
GTGAGCCTTCAATTCTGGATTGTAGTTCATTCCAGATATAGTCAATTTGA
CAACCAGGAATAGCCACTACACTAGGTATGCCATTATGGTCAGGTGGGGG
AAACACAAGTATGCCACATGTTCAAGACAAGGAATGAATGTGGAGGAGTG
GGAGAGGAGACTGGAAAGGGTGTTAGGAACANAAGGAGAAACTACCACAT
TTACCAATACCGTTAGCAATGTTGGTGGCCATAGGAGCCGTATAGAAATT
TAAGCAAGGTACACATAGTATAAGAATTTTATCTGACGAGCCGTTGAGCT
TCATCTTTTATAACAGATTANAAAGAGATGCGGTTGGTACCTTTCCAACT
TTCCTATTGCAGGTATTATGTGGCCAGGGCGCCAGAGTGGGGAATGATAA
AGAACTCCTCTCCTTATGGCTTTTTCCCCGGTTGTTGTACGGACCACTTT
ACTCCCTGTTTTTCCTCAATTCCTCCTGTCGTCATTTATTATTTTTTTAA
TCCCAATTTTCCTTATTTCTTTCTTTTTTTTATTGATTCGTCTTCTTTCT
CCTTCTCCTATCTTCTTGCGTTTCTAACATACCCTCGCCCCTCTAGTTGT
GTCTCTTCCCTCTATTACGTGTTTGCTCTTTTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no408_c17.b1 MSMg01no408_c17.b1 CHROMAT_FILE:
MSMg01no408_c17.b1 PHD_FILE: MSMg01no408_c17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:04 2005
         (484 letters)



>mm_chr9_52164156_52165039
          Length = 884

 Score =  913 bits (472), Expect = 0.0
 Identities = 481/484 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtgaccaaagttctcagccagacagccctcaagagttcaaatggtcttgttcatatcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tgtgaccaaagttctcagccagacagccctcaagagttcaaatggtcttgttcatatcct 625

                                                                       
Query: 61  gaaagaaaacatatttacatcatggggtgaagggggaaaaggaagttaatgtcaaacaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gaaagaaaacatatttacatcatggggtgaagggggaaaaggaagttaatgtcaaacaat 565

                                                                       
Query: 121 tatggtttgtagtgtggactacgggaagactctgaaaacagatagtgctgatggctataa 180
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgtggtttgtagtgtggactacgggaagactctgaaaacagatagtgctgatggctataa 505

                                                                       
Query: 181 actgtgttttagtaaactttaacggtacacggaagttggcttaaatgatggattttacca 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 504 actgtgttttagtaaactttaacggtacacggaagatggcttaaatgatggattttacca 445

                                                                       
Query: 241 caaactaaaaaccatacttactaaattataattttgacagtgaactattgtaaaacaaca 300
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 444 caaactaaaaaccatacttacaaaattataattttgacagtgaactattgtaaaacaaca 385

                                                                       
Query: 301 aatgagaaggtggctaagaaatgccagttgtgctctttcctgtctctctttaactgaaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aatgagaaggtggctaagaaatgccagttgtgctctttcctgtctctctttaactgaaga 325

                                                                       
Query: 361 cggtggaggcttttgaacacagtagcattcagatcagggcttctaagaatcacctcccgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cggtggaggcttttgaacacagtagcattcagatcagggcttctaagaatcacctcccgt 265

                                                                       
Query: 421 tagtcctgtgacattaagacagttacacaattactccagcactcaatttccccatctacg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tagtcctgtgacattaagacagttacacaattactccagcactcaatttccccatctacg 205

               
Query: 481 gtaa 484
           ||||
Sbjct: 204 gtaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space:   414276
Effective search space used:   414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no408_c17.g1 MSMg01no408_c17.g1 CHROMAT_FILE:
MSMg01no408_c17.g1 PHD_FILE: MSMg01no408_c17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:04 2005
         (262 letters)



>mm_chr9_52003298_52003959
          Length = 662

 Score =  499 bits (258), Expect = e-146
 Identities = 261/262 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atagccactatgcctcaagatctccatgccaaaatcaaggtcagaaacttgtatctccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atagccactatgcctcaagatctccatgccaaaatcaaggtcagaaacttgtatctccca 260

                                                                       
Query: 61  gcctccagattaggatcactggtgagccttcaattctggattgtagttcattccagatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcctccagattaggatcactggtgagccttcaattctggattgtagttcattccagatat 320

                                                                       
Query: 121 agtcaatttgacaaccaggaatagccactacactaggtatgccattatggtcaggtgggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtcaatttgacaaccaggaatagccactacactaggtatgccattatggtcaggtgggg 380

                                                                       
Query: 181 gaaacacaagtatgccacatgttcaagacaaggaatgaatgtggaggagtgggagaggag 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 gaaacacaagtatgccacatgttcaagacaaggaatgaatgtggaggggtgggagaggag 440

                                 
Query: 241 actggaaagggtgttaggaaca 262
           ||||||||||||||||||||||
Sbjct: 441 actggaaagggtgttaggaaca 462


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 262
Length of database: 662
Length adjustment: 9
Effective length of query: 253
Effective length of database: 653
Effective search space:   165209
Effective search space used:   165209
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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