BAC Information

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BAC

Clone NameMSMg01-408D18
Chromosome9 (Build37)
Map Location 28,259,598 - 28,259,870
singlet/doubletsinglet
Overlap geneOpcml
Upstream geneLOC666440, LOC100041202
Downstream geneHnt, LOC625222
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-408D18.T7 (MSMg01no408_d18.b1)MSMg01-408D18.TJ (MSMg01no408_d18.g1)
ACCAG506000AG506001
length795769
length of high quality
(start - end)		277 (39 - 315)434 (69 - 502)
definitionCHROMAT_FILE: MSMg01no408_d18.b1 PHD_FILE: MSMg01no408_d18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:09 2005CHROMAT_FILE: MSMg01no408_d18.g1 PHD_FILE: MSMg01no408_d18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTC
GAGTCTTCTCACTGACCATCCATTTTCAGGCATGTGGAAGGCATAGCTGT
GCTTCTTTCTGTCATACACTAGATGTGGGGTCTAGCCTCTGCTCTCTAGG
GAATATTATCAATTCCATCTAGTCTGACTTAAATACTAAATGTATAGTAG
AGAAGAAAGAAGAAAACTGACCTAGTGCCACATGTCCTGAAGTCCCCTTG
TCCGGCATGTCTGCCTTCTTTTGGATGTATAGACAGTCTGTTCAGATCTT
AGTCGCACAGAACACCTTATTAGCTCTTTCACCTTTCTTCTTCTTATCCA
TTCCTCTTTTTTTTTATATCAGTTATTCATTTTATAACCCAGTATCTTTC
TATTCCCCAAATTCCCCTTCCCTTTCTTCTCTGAGAAGGAAGGGGGAGGA
CTCCCTGGGTATCACACCATCCTGGTCGCACCATCAAGTCACTGCAGGAC
TAGGTGAATCCTCTACCCCTGTTTCTTTCCTAGTAAATTTTCCATGGTGG
TATTATTCCAAGGTTTTGTCCTTTGTATCTCCCCAAATTTCACCCGGAAA
AGGGGAGGGAGTTTTCCCCTCTGAATTTTGGAAAATTTGGGACCCTAAAC
GGGGTATAAGCTTGTTCCCGAATTGCATCTCTAAAAAAATAATCTCTGGG
GTGATTTTTTTTGTGGACGGGTGGGTATATCTCCCCGCACAAGCATCTTA
CGCCTGTTGTGTGTCTATTCTTTTTTTTTCCCATTTTTTATCTTG

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTGCACTTTTGTTATTTAGAATTTTTAGATT
TTTAACCTGAAATTTCTTTAACATTTCTTTCTTTAAAATCTATTGATAAT
AATTCTGTTTTTAAAATTTTTTATGGAAAATCTTTACTTCTCTTGCATTC
CCAAAGACAGTTTTGCTAGATATAATTTTCTTGTTCCACAATTTCATTCT
TATAGCACTTTTGAATATATCATTACACCATTTCATGAAATAAAACTATC
AATTTTTACCTCTAATCTTAAGTTTCTTTCTATGTCATCAACTTCTTTCT
TGCTTGCTGTTTTCAAAATTCCCTTTGGGCTTGTGTTTGGAAAGGCTAAT
TAATATGTGTCTTGATGTGTGTTTAGAGTTATTAAATGTTTTTGTCTTCA
TCAAGATAGATATTCACGCCCCTCTCCAGGGTTACAGACTTTGCCCCATG
TTTTGTGTTTGAATGTGCTTTCTACTGGTTTCTCTTTCTTTGTTTCTTCT
GGAAACCTACCGAAAAGATACCGACCACTTTCAGCTTAAAGAGGCTTAAC
TTAAAATTTTTATTTATTTTCCGAAGGTGTAAAAAAAGGTTTCCAAACAA
ATTTTTTTTTTAATTTTAAAAAATAAACTTTTTATTTATCTTTGGAAATT
CTACCGGAAATAAGGTTTCGGGCACTTTTCCCCCACTCTTCCCCCAAAAA
TTTTTTTTTATATTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no408_d18.b1 MSMg01no408_d18.b1 CHROMAT_FILE:
MSMg01no408_d18.b1 PHD_FILE: MSMg01no408_d18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:09 2005
         (277 letters)



>mm_chr9_28259394_28260070
          Length = 677

 Score =  520 bits (269), Expect = e-152
 Identities = 272/273 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcgagtcttctcactgaccatccattttcaggcatgtggaaggcatagctgtgc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcgagtcttctcactgaccatccattttcaggcatgtggaaggcatagctgtgc 264

                                                                       
Query: 65  ttctttctgtcatacactagatgtggggtctagcctctgctctctagggaatattatcaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttctttctgtcatacactagatgtggggtctagcctctgctctctagggaatattatcaa 324

                                                                       
Query: 125 ttccatctagtctgacttaaatactaaatgtatagtagagaagaaagaagaaaactgacc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttccatctagtctgacttaaatactaaatgtatagtagagaagaaagaagaaaactgacc 384

                                                                       
Query: 185 tagtgccacatgtcctgaagtccccttgtccggcatgtctgccttcttttggatgtatag 244
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 385 tagtgccacatgtcctgaagtccccttgtctggcatgtctgccttcttttggatgtatag 444

                                            
Query: 245 acagtctgttcagatcttagtcgcacagaacac 277
           |||||||||||||||||||||||||||||||||
Sbjct: 445 acagtctgttcagatcttagtcgcacagaacac 477


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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