XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTT
TTGGTTGCTTCAAATCCCTCATGTAGTGACTTTAGTGGACATCTTGTTTT
CTTTTGCTATTAGTTTAATTTTGAATTTTAACTGAGAGAGGAAAAGAGAT
ACAGCAAAATTTGAATTTATTAATATTTTCGACTTGCTCATGTTGTGACG
ATATGCATGCAAAGGATTACTTCTGGAAATCTAGCAATAAACATTCTTTC
TTTTGAAGATTAAAAGTTTGTATGCCAACAAACCCACTTACTGGAAGTTA
GGAGATTAGAGTTCAAGTACTATGGAATTGATTTTATTCAGCATCTTGGA
TGTTGGGGCCACTAGTGCTTCGGCCCTTCCAGATTAATCCTGTTAGAGTG
AATCTCATTGCAGCACAAACATATGAATACCCAGAGGTCTGTTTGGAGGC
AGCTGATGGTTCCACTACTGCCACTATGTCACTACTAAGCAACTTATAGT
CCAGGCCCAGCAATAATGGAAAAGACTCTCTCTTGGACTTTGTGGGAATT
GGATTTGACCAGCATCTTGATGTATAATTTTTAAAAGAAAAAGCCCTACA
AAATAACTGTAAAACGCATGTTGTGAAAAATTCTACCCAAGACATGGTAA
ACGGCGTTTTCCCCCGTGGGGGCAAAAAAAAGGCGTCCCCTCTTCGTCTG
GATTCCTCTGGTTCCCCCCCTACCCTCCTTGCGCCTCTACTTTGCCCTCA
TTTCCCCCTACCTCCTTCCTCCAACTCTTTTGTTGTTTATTCACGCTTTT
CTCTCCTCTT

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTCTGCTTTATAAAGAAGGAGATCATGGGGCAG
GGGGCAGGGTGCATATAGAGTTATACAAAGTAGGTGGGATTTCCCACCTC
AACTAATGTAATCTAGATTACCACCACAATTACACACCCCCCCACACACA
TACACAGATGTCTAACGTCCATTTCTCAGGTGATTCAATTAATACTAACA
ATCATAACTCTATTCTTGGTGAACTTGACACTCAAACACATAACTTTATA
AGCCATAAACTTCTATTTCCTGTCCTCAAAGTAGCAAATTTATCTCAGAC
TCAGAAACACAGTCCAAATTTATAGATTTTATTTATGTTTAGCTTTAATT
ATGTGTGTGCGCGTGTGGTTCTAGGTATGCTTGTGTATNTGATCTGTGTC
NAATCTGACTGATGCCCTTTGTAAGTATTATTTTTTCCTTATCTTGCATT
TTACTCCCTTTTTTCCCTCTTTATATTTATTTTCTCGTTCTTTTCTTCCT
CTTTTTTTTTTTCATCTAAAATTCACCCCCCGCCTCTCCTTTCCTTTTTT
CTTCCGTTCGTTTCATTTTCTCTCTTTCTTTTCTTTGCCTTCTCTTTTTT
TTTTCCTTTTTTCTTTTTCCCATTTCTTCCGTTCCTTATATCCTCCTATT
TCTTTATCTTCTTTCCTTCCCTTTTTCTCCTTTCCTCTCTTTTCATCTGT
TTATCCCTTCCCTCTTTTTTT

Query= MSMg01no408_h18.b1 MSMg01no408_h18.b1 CHROMAT_FILE:
MSMg01no408_h18.b1 PHD_FILE: MSMg01no408_h18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:28 2005
         (466 letters)



>mm_chr9_82232885_82233750
          Length = 866

 Score =  839 bits (434), Expect = 0.0
 Identities = 455/462 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcttttggttgcttcaaatccctcatgtagtgactttagtggacatcttgtttt 64
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 gaattctcttttggatgtttcaaatccctcatgtagtgactttagtggacatcttgtttt 607

                                                                       
Query: 65  cttttgctattagtttaattttgaattttaactgagagaggaaaagagatacagcaaaat 124
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 606 cttttgctattagtttaattttgaattttaactgagagaggaaaggagatacagcaaaat 547

                                                                       
Query: 125 ttgaatttattaatattttcgacttgctcatgttgtgacgatatgcatgcaaaggattac 184
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ttgaatttattaatattttcaacttgctcatgttgtgacgatatgcatgcaaaggattac 487

                                                                       
Query: 185 ttctggaaatctagcaataaacattctttcttttgaagattaaaagtttgtatgccaaca 244
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ttctggaaatctagaaataaacattctttcttttgaagattaaaagtttgtatgccaaca 427

                                                                       
Query: 245 aacccacttactggaagttaggagattagagttcaagtactatggaattgattttattca 304
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 426 aacccacttactggaagttaggagattagagttgaagtactatggaattgattttattca 367

                                                                       
Query: 305 gcatcttggatgttggggccactagtgcttcggcccttccagattaatcctgttagagtg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gcatcttggatgttggggccactagtgcttcggcccttccagattaatcctgttagagtg 307

                                                                       
Query: 365 aatctcattgcagcacaaacatatgaatacccagaggtctgtttggaggcagctgatggt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 aatctcattgcagcacaaacatatgaatacccagaggtctgtttggaggcagctgatggt 247

                                                     
Query: 425 tccactactgccactatgtcactactaagcaacttatagtcc 466
           |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 246 tccactactgccactatgtcactactaagcaacttacagtcc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)