Query= MSMg01no408_j11.b1 MSMg01no408_j11.b1 CHROMAT_FILE:
MSMg01no408_j11.b1 PHD_FILE: MSMg01no408_j11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:37 2005
(400 letters)
>mm_chr9_41508979_41509777
Length = 799
Score = 737 bits (381), Expect = 0.0
Identities = 393/397 (98%), Gaps = 1/397 (0%)
Strand = Plus / Minus
Query: 4 ggaattctatatcgttctcacaagtttcttacaaatccaaaaatattcctaagtaaaagg 63
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 ggaattctatatcgttgtcacaagtttcttacaaatccaaaaatattcctaagtaaaagg 540
Query: 64 cttccttgaagggtctcctaaaccaagctagggattgtataggatccacatcctcgctgg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 cttccttgaagggtctcctaaaccaagctagggattgtataggatccacatcctcgctgg 480
Query: 124 attggctctattggacttcaaataagcattgcattcaaaaagaaattaaattgaacaggc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 attggctctattggacttcaaataagcattgcattcaaaaagaaattaaattgaacaggc 420
Query: 184 ttcattcttattggtcattagtaacagagaacatcaagctggctaggtttggtgaagaag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 ttcattcttattggtcattagtaacagagaacatcaagctggctaggtttggtgaagaag 360
Query: 244 ggagagagttctttactgactaggtgacacatattctattcccaagttcttctctagggt 303
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 359 ggagagagttctttactgactaggtgacacata-accattcccaagttcttctctagggt 301
Query: 304 tacagtcaggaaatacttactctgtctcttataaatgcgccctagtgccaggctatggag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tacagtcaggaaatacttactctgtctcttataaatgcgccctagtgccaggctatggag 241
Query: 364 atgggcataaactctgcaatgaagaggatgtgtgtgg 400
|||||||||||||||||||||||||||||||||||||
Sbjct: 240 atgggcataaactctgcaatgaagaggatgtgtgtgg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 799
Length adjustment: 9
Effective length of query: 391
Effective length of database: 790
Effective search space: 308890
Effective search space used: 308890
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no408_j11.g1 MSMg01no408_j11.g1 CHROMAT_FILE:
MSMg01no408_j11.g1 PHD_FILE: MSMg01no408_j11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:37 2005
(411 letters)
>mm_chr9_41339635_41340445
Length = 811
Score = 779 bits (403), Expect = 0.0
Identities = 409/411 (99%)
Strand = Plus / Plus
Query: 1 cagggattcagacagctgactgctgactgctgaataaataggctcatacaaaacaagggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagggattcagacagctgactgctgactgctgaataaataggctcatacaaaacaagggt 260
Query: 61 ttgttttgctttctgggagcctaattgttctccaagttatgacgatctttcccagaaagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgttttgctttctgggagcctaattgttctccaagttatgacgatctttcccagaaagt 320
Query: 121 gaagactggctgacagcgccgagctggttctgactgcagtgtgggcctgcaccttgtagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagactggctgacagcgccgagctggttctgactgcagtgtgggcctgcaccttgtagt 380
Query: 181 tatcctgtccctcatccttcagcaagtgcaggccactgggtcctttacttaataaacaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatcctgtccctcatccttcagcaagtgcaggccactgggtcctttacttaataaacaag 440
Query: 241 aggatgggttgagttggacatgtggatctgcctctttataccacgtgactacctagcaaa 300
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggatggggggagttggacatgtggatctgcctctttataccacgtgactacctagcaaa 500
Query: 301 aagacaagaaggagtcttatttaagacagataaaacaaaaataaaacatagaaacaaaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagacaagaaggagtcttatttaagacagataaaacaaaaataaaacatagaaacaaaaa 560
Query: 361 gcacccatccccccccacacacacaccaaaaacaaaaacaaacaaacaaac 411
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcacccatccccccccacacacacaccaaaaacaaaaacaaacaaacaaac 611
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space: 322404
Effective search space used: 322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
