AAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATTGATAACTACTAATACAGGCCATAAAAGATGCTGTTTTAAGGTGT
TCTTCTGAAAAACATTGCGAAGGAGTAAGGAAATGTAAAAAGTAACGAAA
AGGCATGTTCCTAGTTTTGCTCATCCACTTAACATTATATGAAAATAAAA
TATTCATTCTGCTGCAGTTCTTAGTTGACATGTGAAAAGGCTGTATATCT
ATAAGAAACAAGAAGATAATTATACTGGCACAAAATCAGTTATTTTTAGA
ACATTAATTTAGTCCAAACCCTATAGTCATGAACTTTGTGGCCTTTTTTT
TTCCCACTGGTAGCCTCCACAATGATCCCGCCTGGACAAACCCCTTTCTC
ACTTATTATTTCACTTTTCTTGACCTAACAGTGTGGATTACACAAACCAC
AATGCCAGACCTTTAGTCCTGGCCTCTCCTCTGTTATATACTAGCAATGA
GCATACTCACTAAACATTCACAAGTGTGCACAAAATCCTCGCTAGAGAAA
GTAACAAGGAGCTAAAAGATCTGCAGCCCTGTAGGTGCACAACAGTATAT
CTAAACAGTACCCCGGAGTCTTTGATCTAGTTGCAAAGTATCAAAGAAGG
GCCAATCGCCCTCCCTGGAAAAAAGCCTATGGACCCCCAATTTTTTTCCC
CCCCCGGGGAAGCCCGGCCAAAAATGGAAAAGGGGGAGAGGAAGAATGTG
CCTNTTCA

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTAGCCCATTTTTAAA
TGGGGTTATTTGAATTTCTGGAGTCAAGCTTTTTGAGCTCTTTGTATATA
TTGGATATTAGTCCCCTATCAGATTTAGGACTGGTAAAAATCCTTTTCCA
TTCTGTTGGTGGCCTTTTTGTCTTAGCATGGTCTTTGTATTTCTTTTCAG
CTCATTTTTGCTTTTGGAGCAACCATGGCCCAAGAACACAGACTTAGTTT
CCCCTACATTCCATGTTCCAAAATGGAAGCAGTTTCATGAAGTTTTATCT
TTTTACAGAGGAAAGAGAGTCATAAATCAAGAGAAGTTTAAAACTCACCT
GTGAGTACATTGGAGAGGTAGTGGGAAAATCTAAAACCATTAGATTCCTA
AACATTCCTAAAGGTAGCCACCAAGTTCTATTTCCTTATTTGGCCATTTT
TTCCTCCTGAGGTTGCAGTGTTGATGTCCAGTAACCAAAAGCCCACAATT
TGGCTCACATAATTATCCTGCCCAATTAAAGTTAACCTTCTTATCCTAAC
CTTGAATTCCCCCCTTTACCTTCTAAACCACCATTTGCCTATGGGCCTCA
TCCTGTCTCTCCTTTTTCCAAAAGAAGAAGACCTTTTGTCCTTCTAAAAA
AAAAACCCCTTTCCCTTCCCCTTTATTCTCCTCCCTTTTCCCCTTGGAAA
TTGGTCCCCGCGCCTGGGGTTAA

Query= MSMg01no408_j23.b1 MSMg01no408_j23.b1 CHROMAT_FILE:
MSMg01no408_j23.b1 PHD_FILE: MSMg01no408_j23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:39 2005
         (467 letters)



>mm_chr9_90424158_90425025
          Length = 868

 Score =  822 bits (425), Expect = 0.0
 Identities = 455/465 (97%), Gaps = 3/465 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattgataactactaatacaggccataaaagatgctgttttaaggtgttcttctg 64
           ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 668 gaattcattgataactaataatacaggacataaaagatgctgttttaaggtgttcttctg 609

                                                                       
Query: 65  aaaaacattgcgaaggagtaaggaaatgtaaaaagtaacgaaaaggcatgttcctagttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 608 aaaaacattgcgaaggagtaaggaaatgtaaaaagtaacgaaaaggcgtgttcctagttt 549

                                                                       
Query: 125 tgctcatccacttaacattatatgaaaataaaatattcattctgctgcagttcttagttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 tgctcatccacttaacattatatgaaaataaaatattcattctgctgcagttcttagttg 489

                                                                       
Query: 185 acatgtgaaaaggctgtatatctataagaaacaagaagataattatactggcacaaaatc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 acatgtgaaaaggctgtatatctataagaaacaagaagataattatactggcacaaaatc 429

                                                                       
Query: 245 a-gttatttttagaacattaatttagtccaaaccctatagtcatgaactttgtggccttt 303
           | ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 428 aggtt-tttttagaacattaatttagtccaaaccctatagtcataaactttgtggccttt 370

                                                                       
Query: 304 ttttttccc-actggtagcctccacaatgatcccgcctggacaaacccctttctcactta 362
           ||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 369 tttttcccccactggtagcctccacaatgatcccgcctggacaaaccccttcctcactta 310

                                                                       
Query: 363 ttatttcacttttcttgacctaacagtgtggattacacaaaccacaatgccagaccttta 422
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ctatttcacttttcttgacctaacagtgtggattacacaaaccacaatgccagaccttta 250

                                                        
Query: 423 gtcctggcctctcctctgttatatactagcaatgagcatactcac 467
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gtcctggcctctcctctgttatatactagcaatgagcatactcac 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 868
Length adjustment: 10
Effective length of query: 457
Effective length of database: 858
Effective search space:   392106
Effective search space used:   392106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)