BAC Information

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BAC

Clone NameMSMg01-409B04
Chromosome9 (Build37)
Map Location 94,506,802 - 94,507,210
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC674371, LOC384967, EG384968, 1190002N15Rik, EG667601
Downstream geneSlc9a9, Chst2, LOC667088, 2610101N10Rik, LOC100040097, Paqr9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-409B04.T7 (MSMg01no409_b04.b1)MSMg01-409B04.TJ (MSMg01no409_b04.g1)
ACCAG506644AG506645
length724769
length of high quality
(start - end)
---409 (58 - 466)
definitionCHROMAT_FILE: MSMg01no409_b04.b1 PHD_FILE: MSMg01no409_b04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:17 2005CHROMAT_FILE: MSMg01no409_b04.g1 PHD_FILE: MSMg01no409_b04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTAATTTCTTTATAAAAAAATAATATAAAATTAAATTTATAAATTTTTT
TAATAATATATACAAATATTAAATATATAAATTTTTATATTTTCATTTAA
AATAACATCCACAAATAATAAATCATAAATAAATAAAAATTATTTTAAAT
ATAACTTTATAAATAATACACACAAACTTCCTTATCTACTTAAAATAAAA
AAACAAAAAATAATTAATTAAATATTAATAATAATTAAAATAAAAAATAA
TAAAAAAAATATAAACAATAATAAAAAACAAAATAAAAAAATATATAAAA
TAAAAAAATAATCAATTTTTATTACTATAATACAAACTAAATATAACAAC
ATATCATAACATATTATAAATTATTACTCAACCTAATATCTAATAAATAA
ATTTACTAACATAACATTTTATAATATTTAAAACCTAAAAAATTATATTA
ACATAAATAAACATAAAAATACATTAACCTAATTAATTTTTATTTTATTT
TATTTCAAATTACTCTTAATATAAATTTCATCACATATTTATTTTTCAAC
TCATATATAATATATTCAATAATTTACACACATATTTCTCACACAACTTC
AAAATAATTTAAAAACTATAATAAATAATTATTTTAACTAATTTATAAAT
ACTATTAAACAAAAATATAATAACAATATAAAAATATATTAAAAACCAAA
TATTATATCCTCATCTATAAATAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTCATATTTCTAAGAGACTATCCATGAAAGGACAGGAGAAACAG
GAAATTTTCACACAGCATGGAAGAGGGCGGGGCTGACCCAGTGGGCAGAG
AGACAAAGGCCAGTAGCTTGCCCAGCTCTTTCACACCTAGACATTTTATG
GCCTCTCTGCTCGGAACTACATTTATGAGCTAACCCAGGAAGTGTGTTAG
ATTGGAAACTGGAGATTTTTCTAGTTAAATGTTGGCTCATGTACAGCATA
CCCCTCAGGCCATTTTCTGGACTGTAACTGGGTAGGAGAAGTAATGACCA
CCTTGAATGGCCCTTAGAAGTGAGCCAAGAGGCAAGCAGACTAAGTGTGG
CATGGTTCAAAAGCCCTGATTGAACAATCAAAGGGGCCTGCTTCTTAGCC
ATACTTTTCATTCTCAGAATACCTTTGAGACAATTACAAAATGCTTCTAG
GCTTCTGTTGTCCCCAATACTTTACGGTCTTTTTAGATATAACGATAATG
GCTCTGTAGATAATATTATGGCGTTGTAATTGATGTTATCCCCCATTCAT
TTTTTTTTATTTTTAGTTACTTTCTATCAACTGAATTCTGTTTACTTGGC
CTCCCTGCTTTCGTGTCGCCCCTTGTTTATCTATATCACTCCTACATTAA
TCAACCTTGTTATTCTTCTCATCTATACGTCTCCCCCGGCTCTTGTCGCT
CTTTTTTTTGTTCTGCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no409_b04.g1 MSMg01no409_b04.g1 CHROMAT_FILE:
MSMg01no409_b04.g1 PHD_FILE: MSMg01no409_b04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:18 2005
         (409 letters)



>mm_chr9_94506602_94507410
          Length = 809

 Score =  754 bits (390), Expect = 0.0
 Identities = 405/410 (98%), Gaps = 2/410 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatatttctaagagactatccatgaaaggacaggagaaacaggaaattttcacacagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tcatatttctaagagactatccatgaaaggacaggagaaacaggaaattttcacacagca 550

                                                                       
Query: 61  tggaagagggcggggctgacccagtgggcagagagacaaaggccagtagcttgcccagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 tggaagagggcggggctgacccagtgggcagagagacaaaggccagtagcttgcccagct 490

                                                                       
Query: 121 ctttcacacctagacattttatggcctctctgctcggaactacatttatgagctaaccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ctttcacacctagacattttatggcctctctgctcggaactacatttatgagctaaccca 430

                                                                       
Query: 181 ggaagtgtgttagattggaaactggagatttttctagttaaatgttggctcatgtacagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ggaagtgtgttagattggaaactggagatttttctagttaaatgttggctcatgtacagc 370

                                                                       
Query: 241 atacccctcaggccattttctggactgtaactgggtaggagaagtaatgaccaccttgaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 369 atacccctcaggccattttctggactgtaactgggtaggagaagtaatgactaccttgaa 310

                                                                       
Query: 301 tggccct-tagaagtgagccaagaggcaagcagactaagtgtggcatggttcaaaagccc 359
           ||| ||| |||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 309 tgg-cctctagaagtgagccaagaggcaagcagggtaagtgtggcatggttcaaaagccc 251

                                                             
Query: 360 tgattgaacaatcaaaggggcctgcttcttagccatacttttcattctca 409
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tgattgaacaatcaaaggggcctgcttcttagccatacttttcattctca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space:   320000
Effective search space used:   320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)