BAC Information

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BAC

Clone NameMSMg01-409D20
Chromosome9 (Build37)
Map Location 39,125,835 - 39,126,290
singlet/doubletsinglet
Overlap geneOlfr948
Upstream geneOlfr25, Olfr898, Olfr899, Olfr900, Olfr147, Olfr901, Olfr902, Olfr903-ps1, Olfr904, Olfr905, Olfr906, Olfr907, Olfr908, Olfr909, Olfr910, Olfr912, Olfr913, Olfr914, Olfr915, Olfr916, Olfr917, Olfr918, GA_x5J8B7W60AJ-925630-926226, Olfr919, Loh11cr2a, Olfr920, Olfr921, Olfr922, Olfr923, Olfr924, Olfr26, Olfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934, Olfr935, Olfr146, EG628171, Olfr937, LOC667260, Olfr938, Olfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1, Olfr27, Olfr942-ps1, Olfr943, Olfr944, Olfr144, Olfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1
Downstream geneLOC667312, Olfr949-ps1, Olfr950-ps1, Olfr951, Olfr952, Olfr953-ps1, Olfr954, Olfr955, Olfr956-ps1, Olfr44, Olfr957, Olfr958, Olfr959, AW551984, Olfr148, Olfr960, Olfr961, GA_x5J8B7W60AJ-4787-4010, Olfr963, Olfr964-ps1, Olfr149, Olfr965, Olfr966-ps1, Olfr150, Olfr967, Olfr968, Olfr969, Olfr970, Olfr971, Olfr972, Olfr973, LOC100043015, Olfr974, Olfr975, Olfr976, Olfr977-ps1, Olfr978, Olfr979, Olfr980, Olfr981, 1700001J11Rik, Olfr982, Olfr983, Olfr984, Olfr985, 1700030E15Rik, LOC235279, Olfr986, Zfp202, Scn3b, Gramd1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-409D20.T7 (MSMg01no409_d20.b1)MSMg01-409D20.TJ (MSMg01no409_d20.g1)
ACCAG506771AG506772
length743724
length of high quality
(start - end)		460 (55 - 514)435 (59 - 493)
definitionCHROMAT_FILE: MSMg01no409_d20.b1 PHD_FILE: MSMg01no409_d20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:31 2005CHROMAT_FILE: MSMg01no409_d20.g1 PHD_FILE: MSMg01no409_d20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNAAGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTTGAACAAAAAAGGCTTTATGTAAGCAGAAGTCGTG
TGAAGATTATTAATTAGAGCAAAATTGTTCAAAAACATATAGATTGAATT
GATACTATTAATTTTATCCTCCTTGTCATTACTATTACTCATTTATGACA
CTTTGATAATTTTTCGATAATTAAAACTGTCAATATTAAATTTCATGCAC
CTAATATCTCATACATTTCTCAGAATGAACAATGTGGGCAAATGTTAAGG
ATAACATGAATGCTTATGGCCATAGCTGATTGCCAGTCAAGTTACATATT
TTCACGTTTGATAAATATTCCTTTAAATTTATAAATTTCACTCTTTAATT
ATAACACAAATGTAACTTTTTATTCATTTTAATTCGGTTTTGAGAACTTC
ATATGAAAATGTAATCATTTTCCTCATCTCCCACCAGCCATTCTCCCATG
ATCTTCCTGTTCTCTCTCAAATAGTAACCTCTTTTCCTTTCCTTCATATA
TACCCTANGAAGACAGATTCAGTGTTAGCAATTATTATTTACTCAGAAAG
TGGGAGCGAAATCCCCTCTTTTAATTTGGAATACTAAGGACAAGTTTGTT
TTTTTTTTAAGAAACATAATATTTAAAGTGGCGGGGGGTTCCCCTGCTAA
CAAAAAAAAAAAGTCCCGGGGGCCATTAAACTCCATTGAAAAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTATGGGCCAAGCAAAAGTGTCCTCTGTGTTTTGTACTACAGT
TGTACCCATGCTGAACCCCTTCATCTACAGCCTGAGGAATAAGGATGTCA
GTTTTGCACTGAAAAAAATACTTGAAAGAAAAAAATTCATGTAAGCAGAA
ATCATGTGAGAATTATTTACCACAGAAAAATAATTAAAAATACATAGAAA
TATTTTTGACTCCACCTGTCATTATTATTACATATTTCCTAGGATCCTTA
ATAATTTTACAATTGGAATTTTCAACTTAAATTTTGAGTACCTAATATAT
TATGTGTTTGTCAGAATAAGAAATGTATACAAATAGTATAGTTTACAGAA
ATTGTTATGATCATAGATGATGTCCCATCATTTTATGTATATTTTCTTCA
TATTTGATAGACTTTACTTTAAAAATATATAAACCTCTTTCTAATTTACC
ACAAATGAAACCTTTTAAAAATTATTTTCTTCATTTTTTAACTCCAGAAT
TTCTCCCCCTCCCGGACATCCTCTGAATGTTCACATCCCATACCTTTTTC
CACCCCTCACCTGTTTCCTGAAAAATTCCCCCTCCCCCATTTTTTTTCTT
TGAAAAACCCTTCCCCCCGGGGACATCGCTTCTTTGAGTATTGGGGACTC
TTTCTGTTTGAATAAATTTGCTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no409_d20.b1 MSMg01no409_d20.b1 CHROMAT_FILE:
MSMg01no409_d20.b1 PHD_FILE: MSMg01no409_d20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:31 2005
         (460 letters)



>mm_chr9_39125631_39126490
          Length = 860

 Score =  866 bits (448), Expect = 0.0
 Identities = 454/456 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttgaacaaaaaaggctttatgtaagcagaagtcgtgtgaagattattaattaga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 gaattcttgaacaaaaaaggctttatgtaagcagaagtcgtgtgaagattattaattaga 601

                                                                       
Query: 65  gcaaaattgttcaaaaacatatagattgaattgatactattaattttatcctccttgtca 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 600 gcaaaattgttcaaaaacatatagattgaattgatactattaattttatcctccctgtca 541

                                                                       
Query: 125 ttactattactcatttatgacactttgataatttttcgataattaaaactgtcaatatta 184
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 540 ttactattactcatttatgacacttcgataatttttcgataattaaaactgtcaatatta 481

                                                                       
Query: 185 aatttcatgcacctaatatctcatacatttctcagaatgaacaatgtgggcaaatgttaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 aatttcatgcacctaatatctcatacatttctcagaatgaacaatgtgggcaaatgttaa 421

                                                                       
Query: 245 ggataacatgaatgcttatggccatagctgattgccagtcaagttacatattttcacgtt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ggataacatgaatgcttatggccatagctgattgccagtcaagttacatattttcacgtt 361

                                                                       
Query: 305 tgataaatattcctttaaatttataaatttcactctttaattataacacaaatgtaactt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tgataaatattcctttaaatttataaatttcactctttaattataacacaaatgtaactt 301

                                                                       
Query: 365 tttattcattttaattcggttttgagaacttcatatgaaaatgtaatcattttcctcatc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tttattcattttaattcggttttgagaacttcatatgaaaatgtaatcattttcctcatc 241

                                               
Query: 425 tcccaccagccattctcccatgatcttcctgttctc 460
           ||||||||||||||||||||||||||||||||||||
Sbjct: 240 tcccaccagccattctcccatgatcttcctgttctc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space:   382500
Effective search space used:   382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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